BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.8 nTPM
HPA:42.8 nTPM
GTEx:51.6 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:30.2 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039259Antibody HPA039260
Glial cells HighMedium
Neuronal cells MediumMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.5
2846 Female, age 79, unknown 41.1
2290 Female, age 72, unknown 38.9
1781 Male, age 74, unknown 38.5
2288 Male, age 75, left hemisphere 36.9
2289 Male, age 61, right hemisphere 36.9
1854 Male, age 80, left hemisphere 36.7
2481 Female, age 94, left hemisphere 35.8
1857 Female, age 85, left hemisphere 34.9
Claustrum
nTPM: 38.2
2491 Male, age 75, both hemispheres 40.7
2568 Male, age 61, both hemispheres 39.7
1956 Male, age 74, unknown 38.8
2645 Female, age 72, unknown 38.7
2198 Male, age 80, both hemispheres 38.2
2392 Female, age 94, both hemispheres 38.2
2196 Female, age 79, unknown 36.8
2284 Female, age 91, both hemispheres 36.7
2292 Female, age 85, both hemispheres 36.2
Globus pallidus, externus
nTPM: 42.8
2567 Female, age 72, unknown 45.6
2646 Male, age 61, right hemisphere 45.2
1996 Male, age 80, right hemisphere 42.1
2395 Male, age 75, both hemispheres 42.0
2772 Female, age 79, unknown 39.4
Globus pallidus, internus
nTPM: 41.4
2483 Female, age 94, right hemisphere 53.5
2287 Male, age 75, right hemisphere 44.5
2566 Female, age 72, unknown 41.8
2778 Female, age 91, both hemispheres 39.4
2037 Male, age 80, right hemisphere 38.1
1818 Male, age 74, unknown 36.6
2111 Female, age 85, right hemisphere 35.8
Nucleus accumbens
nTPM: 36.5
1783 Male, age 74, unknown 38.2
2698 Female, age 72, unknown 37.7
1806 Female, age 85, left hemisphere 36.6
2391 Female, age 94, left hemisphere 36.5
2286 Male, age 75, left hemisphere 36.4
2824 Male, age 61, right hemisphere 35.9
2732 Male, age 80, right hemisphere 35.7
1856 Female, age 91, right hemisphere 35.2
Nucleus basalis of Meynert
nTPM: 38.5
2569 Male, age 61, both hemispheres 46.2
2484 Female, age 94, left hemisphere 38.6
2393 Male, age 80, right hemisphere 35.2
2821 Male, age 75, both hemispheres 34.1
Nucleus of the diagonal band
nTPM: 37.8
1812 Female, age 91, both hemispheres 40.1
2029 Male, age 61, right hemisphere 38.3
2775 Male, age 80, right hemisphere 38.1
1979 Male, age 74, unknown 37.2
2195 Female, age 85, both hemispheres 35.5
Olfactory tubercle
nTPM: 37.5
1998 Female, age 91, both hemispheres 40.4
1846 Male, age 80, right hemisphere 38.5
2856 Male, age 75, right hemisphere 35.9
2487 Female, age 94, left hemisphere 35.1
Putamen
nTPM: 38.8
2647 Male, age 75, left hemisphere 42.1
2466 Female, age 79, unknown 41.8
1829 Male, age 74, unknown 40.7
2489 Female, age 72, unknown 39.9
1937 Female, age 91, right hemisphere 36.8
1838 Male, age 80, right hemisphere 35.1
2482 Female, age 94, left hemisphere 34.9
Septal nuclei
nTPM: 37.7
2031 Female, age 72, unknown 41.9
1960 Male, age 74, unknown 40.3
2009 Female, age 91, both hemispheres 38.9
2059 Female, age 85, both hemispheres 36.5
2394 Male, age 61, left hemisphere 36.0
2199 Male, age 80, right hemisphere 35.6
2629 Female, age 94, right hemisphere 34.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.1
Samples: 246

Max nTPM: 92.2
Min nTPM: 20.6
Std nTPM: 12.6
Median nTPM: 37.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 92.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 91.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 90.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 89.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 89.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 80.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 78.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 78.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 70.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 70.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 69.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.2
Samples: 246

Max nTPM: 106.2
Min nTPM: 16.4
Std nTPM: 14.0
Median nTPM: 33.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 106.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 93.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 85.5
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 83.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 79.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 79.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 75.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 74.9
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 72.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 72.6
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 72.4
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Brain - Putamen (basal ganglia)
Average nTPM: 51.6
Samples: 205

Max nTPM: 204.3
Min nTPM: 22.9
Std nTPM: 22.4
Median nTPM: 46.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 204.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 132.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 130.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 116.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 114.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 111.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 100.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 96.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 93.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 91.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 91.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.3
FF:10164-103B2 76 years, female 23.3
Globus pallidus
Scaled Tags Per Million: 24.4
FF:10161-103A8 76 years, female 29.0
FF:10175-103C4 60 years, female 19.7
Nucleus accumbens
Scaled Tags Per Million: 35.6
FF:10037-101F1 23-56 years, mixed 35.6
Putamen
Scaled Tags Per Million: 25.5
FF:10176-103C5 60 years, female 25.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.8
Pig sample Sample description nTPM
Caudate
nTPM: 8.3
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.4
Sample A Female 7.4
Sample B Female 8.7
Sample C Male 8.9
Sample D Male 8.0
Putamen
nTPM: 7.0
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.4
Sample A Female 7.0
Sample B Female 6.4
Sample C Male 7.0
Sample D Male 7.4
Septum
nTPM: 8.5
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.3
Sample A Female 10.9
Sample B Female 9.0
Sample C Male 7.9
Sample D Male 6.3
Ventral pallidum
nTPM: 8.8
Samples: 4

Max nTPM: 9.2
Min nTPM: 8.3
Sample A Female 9.2
Sample B Female 9.0
Sample C Male 8.3
Sample D Male 8.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 30.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 24.7
Samples: 4

Max nTPM: 26.6
Min nTPM: 23.2
Sample A Male 23.4
Sample B Male 25.7
Sample C Female 26.6
Sample D Female 23.2
Septum
nTPM: 28.1
Samples: 4

Max nTPM: 30.1
Min nTPM: 26.3
Sample A Male 30.1
Sample B Male 26.3
Sample C Female 27.4
Sample D Female 28.7
Ventral forebrain
nTPM: 30.2
Samples: 4

Max nTPM: 32.4
Min nTPM: 28.4
Sample A Male 30.4
Sample B Male 28.4
Sample C Female 29.5
Sample D Female 32.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
68546287 Antisense, RP_050120_02_C08, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.4
68546287 Antisense, RP_050120_02_C08, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

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