MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.2 nTPM
HPA:41.2 nTPM
GTEx:59.1 nTPM
FANTOM5:22.5 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:23.6 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.3
2586 Male, age 75, left hemisphere 49.7
2666 Male, age 74, left hemisphere 44.9
2019 Male, age 18, unknown 40.5
2828 Female, age 72, unknown 39.4
2411 Female, age 72, unknown 38.8
1827 Male, age 72, unknown 38.6
1833 Male, age 53, unknown 38.2
1870 Female, age 42, unknown 38.1
1830 Male, age 51, unknown 37.8
2219 Male, age 76, both hemispheres 36.8
Dorsal raphe nucleus
nTPM: 38.0
1828 Male, age 53, unknown 39.3
2016 Female, age 72, unknown 38.4
2298 Female, age 72, unknown 38.3
2047 Male, age 72, unknown 38.1
2750 Male, age 76, both hemispheres 36.0
Inferior colliculus
nTPM: 36.8
1890 Male, age 53, unknown 37.1
2849 Male, age 72, unknown 36.9
2097 Female, age 72, unknown 36.6
1848 Female, age 42, unknown 36.5
Median raphe nucleus
nTPM: 35.2
2220 Male, age 76, midline 35.2
Pedunculopontine tegmental nucleus
nTPM: 35.9
2334 Male, age 80, both hemispheres 40.1
1921 Female, age 85, both hemispheres 35.0
2338 Male, age 61, both hemispheres 32.4
Periaquaductal grey, anterior
nTPM: 37.6
2502 Female, age 75, unknown 39.4
1795 Male, age 51, unknown 38.1
1947 Male, age 18, unknown 35.3
Periaquaductal grey, dorsal
nTPM: 36.9
1831 Male, age 72, unknown 38.3
1840 Male, age 53, unknown 37.5
2464 Female, age 72, unknown 36.7
2850 Male, age 76, both hemispheres 35.2
Periaquaductal grey, lateral
nTPM: 35.4
2053 Male, age 18, unknown 38.0
2140 Male, age 76, both hemispheres 34.2
2272 Male, age 74, both hemispheres 34.2
Pretectal area
nTPM: 38.0
2007 Male, age 72, unknown 41.3
1816 Male, age 51, unknown 40.3
1817 Female, age 42, unknown 39.6
1815 Male, age 53, unknown 39.4
2825 Male, age 18, unknown 38.8
1944 Female, age 72, unknown 38.7
2407 Male, age 75, both hemispheres 38.2
2667 Female, age 75, unknown 36.1
2224 Female, age 72, unknown 35.7
2273 Male, age 74, both hemispheres 35.2
2316 Male, age 76, right hemisphere 34.9
Red nucleus
nTPM: 41.2
2588 Male, age 74, left hemisphere 49.6
2584 Male, age 75, left hemisphere 45.2
2503 Female, age 72, unknown 41.3
2725 Female, age 75, unknown 41.2
2769 Male, age 72, unknown 40.8
1821 Female, age 72, unknown 40.7
2785 Male, age 18, unknown 40.4
1904 Male, age 53, unknown 40.3
1954 Female, age 42, unknown 39.9
2227 Male, age 72, unknown 39.4
1865 Male, age 51, unknown 38.3
2823 Male, age 76, right hemisphere 37.0
Substantia nigra
nTPM: 38.8
2665 Male, age 74, both hemispheres 41.7
2583 Male, age 75, right hemisphere 41.4
1851 Male, age 51, unknown 40.5
1889 Female, age 72, unknown 39.4
1941 Male, age 53, unknown 39.3
1916 Female, age 42, unknown 39.0
2590 Female, age 75, unknown 38.1
2699 Male, age 18, unknown 37.6
2241 Male, age 72, unknown 37.0
2409 Female, age 72, unknown 34.2
Superior colliculus
nTPM: 38.6
2664 Male, age 75, both hemispheres 44.4
2587 Male, age 74, left hemisphere 40.4
2668 Female, age 75, unknown 39.0
2261 Male, age 18, unknown 38.3
1895 Male, age 76, right hemisphere 38.1
1995 Male, age 72, unknown 38.1
1796 Male, age 53, unknown 37.4
1839 Male, age 51, unknown 37.4
1913 Female, age 42, unknown 36.9
2087 Female, age 72, unknown 36.5
Ventral tegmental area
nTPM: 37.5
1915 Female, age 42, unknown 38.9
2410 Female, age 72, unknown 38.7
1942 Male, age 51, unknown 38.5
2223 Female, age 72, unknown 37.0
2021 Male, age 53, unknown 36.7
2218 Male, age 76, both hemispheres 34.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.1
Samples: 139

Max nTPM: 211.3
Min nTPM: 24.7
Std nTPM: 31.3
Median nTPM: 49.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 211.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 202.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 161.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 126.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 125.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 124.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 120.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 119.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 116.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 115.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 112.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.5
FF:10158-103A5 76 years, female 22.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.2
Sample A Female 9.7
Sample B Female 7.2
Sample C Male 7.2
Sample D Male 8.0
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 7.3
Min nTPM: 6.1
Sample B Female 6.8
Sample C Male 7.3
Sample D Male 6.1
Substantia nigra
nTPM: 7.6
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.7
Sample A Female 9.3
Sample B Female 6.9
Sample C Male 7.5
Sample D Male 6.7
Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.6
Sample A Female 8.7
Sample B Female 9.1
Sample C Male 8.8
Sample D Male 7.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 25.9
Min nTPM: 21.8
Sample A Male 21.8
Sample B Male 22.7
Sample C Female 24.2
Sample D Female 25.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68546287 Antisense, RP_050120_02_C08, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.