MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:14.7 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:37.6 nTPM
Mouse:5.2 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.7
2219 Male, age 76, both hemispheres 10.8
1833 Male, age 53, unknown 9.4
2411 Female, age 72, unknown 8.9
2828 Female, age 72, unknown 8.9
1827 Male, age 72, unknown 8.7
1830 Male, age 51, unknown 8.6
1870 Female, age 42, unknown 8.6
2019 Male, age 18, unknown 8.1
2586 Male, age 75, left hemisphere 8.0
2666 Male, age 74, left hemisphere 7.2
Dorsal raphe nucleus
nTPM: 10.6
2750 Male, age 76, both hemispheres 12.7
2047 Male, age 72, unknown 11.9
2298 Female, age 72, unknown 10.3
1828 Male, age 53, unknown 9.2
2016 Female, age 72, unknown 9.1
Inferior colliculus
nTPM: 9.5
1890 Male, age 53, unknown 10.2
2097 Female, age 72, unknown 9.5
2849 Male, age 72, unknown 9.2
1848 Female, age 42, unknown 9.1
Median raphe nucleus
nTPM: 16.9
2220 Male, age 76, midline 16.9
Pedunculopontine tegmental nucleus
nTPM: 11.2
2338 Male, age 61, both hemispheres 12.2
2334 Male, age 80, both hemispheres 10.9
1921 Female, age 85, both hemispheres 10.5
Periaquaductal grey, anterior
nTPM: 7.6
2502 Female, age 75, unknown 8.8
1795 Male, age 51, unknown 7.6
1947 Male, age 18, unknown 6.5
Periaquaductal grey, dorsal
nTPM: 8.7
2850 Male, age 76, both hemispheres 9.9
2464 Female, age 72, unknown 8.8
1840 Male, age 53, unknown 8.7
1831 Male, age 72, unknown 7.6
Periaquaductal grey, lateral
nTPM: 8.7
2053 Male, age 18, unknown 9.1
2140 Male, age 76, both hemispheres 8.8
2272 Male, age 74, both hemispheres 8.2
Pretectal area
nTPM: 8.8
1944 Female, age 72, unknown 10.6
2667 Female, age 75, unknown 9.8
2316 Male, age 76, right hemisphere 9.4
1815 Male, age 53, unknown 9.3
2407 Male, age 75, both hemispheres 9.3
2825 Male, age 18, unknown 8.4
1817 Female, age 42, unknown 8.3
2224 Female, age 72, unknown 8.1
2273 Male, age 74, both hemispheres 8.0
1816 Male, age 51, unknown 7.7
2007 Male, age 72, unknown 7.5
Red nucleus
nTPM: 10.4
1821 Female, age 72, unknown 12.6
1954 Female, age 42, unknown 11.6
2227 Male, age 72, unknown 11.1
1904 Male, age 53, unknown 11.0
2769 Male, age 72, unknown 10.9
2588 Male, age 74, left hemisphere 10.7
1865 Male, age 51, unknown 10.6
2584 Male, age 75, left hemisphere 10.3
2503 Female, age 72, unknown 9.8
2823 Male, age 76, right hemisphere 9.7
2785 Male, age 18, unknown 8.8
2725 Female, age 75, unknown 8.2
Substantia nigra
nTPM: 11.1
2699 Male, age 18, unknown 15.9
2665 Male, age 74, both hemispheres 12.5
1916 Female, age 42, unknown 12.0
2241 Male, age 72, unknown 11.5
2409 Female, age 72, unknown 11.3
1941 Male, age 53, unknown 11.0
1851 Male, age 51, unknown 10.6
1889 Female, age 72, unknown 9.3
2590 Female, age 75, unknown 8.7
2583 Male, age 75, right hemisphere 7.9
Superior colliculus
nTPM: 8.9
2668 Female, age 75, unknown 10.7
1895 Male, age 76, right hemisphere 9.1
1995 Male, age 72, unknown 9.0
2087 Female, age 72, unknown 9.0
1913 Female, age 42, unknown 8.9
1796 Male, age 53, unknown 8.8
2261 Male, age 18, unknown 8.8
2587 Male, age 74, left hemisphere 8.3
1839 Male, age 51, unknown 8.0
2664 Male, age 75, both hemispheres 7.9
Ventral tegmental area
nTPM: 11.4
1942 Male, age 51, unknown 14.3
1915 Female, age 42, unknown 11.8
2223 Female, age 72, unknown 11.7
2218 Male, age 76, both hemispheres 11.2
2021 Male, age 53, unknown 9.7
2410 Female, age 72, unknown 9.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 33.4
Min nTPM: 2.0
Std nTPM: 5.0
Median nTPM: 14.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 33.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 29.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 27.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 27.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 25.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 25.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 24.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 23.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 22.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 22.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 22.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.6
Pig sample Sample description nTPM
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 38.1
Min nTPM: 23.9
Sample A Female 28.6
Sample B Female 27.1
Sample C Male 38.1
Sample D Male 23.9
Periaqueductal gray
nTPM: 20.8
Samples: 3

Max nTPM: 22.0
Min nTPM: 19.6
Sample B Female 20.8
Sample C Male 22.0
Sample D Male 19.6
Substantia nigra
nTPM: 37.3
Samples: 4

Max nTPM: 48.5
Min nTPM: 26.9
Sample A Female 48.5
Sample B Female 26.9
Sample C Male 45.8
Sample D Male 27.8
Superior colliculi
nTPM: 37.6
Samples: 4

Max nTPM: 41.2
Min nTPM: 31.6
Sample A Female 41.2
Sample B Female 40.4
Sample C Male 37.1
Sample D Male 31.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.5
Sample A Male 6.5
Sample B Male 4.8
Sample C Female 4.5
Sample D Female 5.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
68080675 Antisense, RP_040929_01_D05, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.