MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA:18.1 nTPM
GTEx:11.6 nTPM
FANTOM5:21.9 Scaled Tags Per Million
Mouse:1.6 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2828 Female, age 72, unknown 20.3
2219 Male, age 76, both hemispheres 17.5
2019 Male, age 18, unknown 17.2
2586 Male, age 75, left hemisphere 16.7
1870 Female, age 42, unknown 16.6
1827 Male, age 72, unknown 16.5
1830 Male, age 51, unknown 16.1
1833 Male, age 53, unknown 16.0
2411 Female, age 72, unknown 15.1
2666 Male, age 74, left hemisphere 15.0
Dorsal raphe nucleus
nTPM: 16.7
2016 Female, age 72, unknown 17.8
1828 Male, age 53, unknown 17.6
2750 Male, age 76, both hemispheres 17.2
2298 Female, age 72, unknown 15.5
2047 Male, age 72, unknown 15.2
Inferior colliculus
nTPM: 17.3
1848 Female, age 42, unknown 18.4
2849 Male, age 72, unknown 17.8
1890 Male, age 53, unknown 16.7
2097 Female, age 72, unknown 16.3
Median raphe nucleus
nTPM: 15.4
2220 Male, age 76, midline 15.4
Pedunculopontine tegmental nucleus
nTPM: 16.2
2334 Male, age 80, both hemispheres 16.4
2338 Male, age 61, both hemispheres 16.2
1921 Female, age 85, both hemispheres 16.1
Periaquaductal grey, anterior
nTPM: 17.0
2502 Female, age 75, unknown 18.3
1795 Male, age 51, unknown 16.9
1947 Male, age 18, unknown 15.8
Periaquaductal grey, dorsal
nTPM: 17.5
2850 Male, age 76, both hemispheres 18.1
1831 Male, age 72, unknown 17.4
1840 Male, age 53, unknown 17.3
2464 Female, age 72, unknown 17.0
Periaquaductal grey, lateral
nTPM: 17.3
2140 Male, age 76, both hemispheres 18.5
2053 Male, age 18, unknown 17.6
2272 Male, age 74, both hemispheres 16.0
Pretectal area
nTPM: 17.8
1815 Male, age 53, unknown 19.0
2273 Male, age 74, both hemispheres 18.6
2667 Female, age 75, unknown 18.6
2316 Male, age 76, right hemisphere 18.4
1817 Female, age 42, unknown 18.2
1944 Female, age 72, unknown 18.2
1816 Male, age 51, unknown 18.0
2007 Male, age 72, unknown 17.2
2407 Male, age 75, both hemispheres 16.8
2224 Female, age 72, unknown 16.7
2825 Male, age 18, unknown 16.6
Red nucleus
nTPM: 18.1
2503 Female, age 72, unknown 20.4
2227 Male, age 72, unknown 19.1
1954 Female, age 42, unknown 18.5
2769 Male, age 72, unknown 18.5
2823 Male, age 76, right hemisphere 18.5
1865 Male, age 51, unknown 18.4
1904 Male, age 53, unknown 18.0
2588 Male, age 74, left hemisphere 18.0
1821 Female, age 72, unknown 17.7
2785 Male, age 18, unknown 17.3
2725 Female, age 75, unknown 16.4
2584 Male, age 75, left hemisphere 16.2
Substantia nigra
nTPM: 16.2
2699 Male, age 18, unknown 19.8
1889 Female, age 72, unknown 17.1
2409 Female, age 72, unknown 16.6
2583 Male, age 75, right hemisphere 16.4
1916 Female, age 42, unknown 15.7
2665 Male, age 74, both hemispheres 15.7
1851 Male, age 51, unknown 15.5
2241 Male, age 72, unknown 15.3
1941 Male, age 53, unknown 15.0
2590 Female, age 75, unknown 14.5
Superior colliculus
nTPM: 18.0
2668 Female, age 75, unknown 20.4
1995 Male, age 72, unknown 19.8
1839 Male, age 51, unknown 18.4
1796 Male, age 53, unknown 18.1
1913 Female, age 42, unknown 17.6
2087 Female, age 72, unknown 17.6
2664 Male, age 75, both hemispheres 17.2
2587 Male, age 74, left hemisphere 17.1
1895 Male, age 76, right hemisphere 16.9
2261 Male, age 18, unknown 16.5
Ventral tegmental area
nTPM: 16.6
2021 Male, age 53, unknown 17.1
2218 Male, age 76, both hemispheres 16.9
2410 Female, age 72, unknown 16.7
1942 Male, age 51, unknown 16.6
1915 Female, age 42, unknown 16.5
2223 Female, age 72, unknown 16.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 28.3
Min nTPM: 2.2
Std nTPM: 5.3
Median nTPM: 10.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 28.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 26.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 25.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 24.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 23.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 23.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 22.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 21.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 21.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 21.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.9
FF:10158-103A5 76 years, female 21.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.5
Sample A Male 1.8
Sample B Male 1.6
Sample C Female 1.5
Sample D Female 1.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
73817423 Antisense, RP_050927_04_D07, Mouse strain C57BL/6J (56 days, male) 10.2
71656828 Antisense, RP_050927_04_D07, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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