BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.2 nTPM
HPA:14.2 nTPM
GTEx:11.5 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:3.9 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005740
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.8
2481 Female, age 94, left hemisphere 14.3
2289 Male, age 61, right hemisphere 12.7
1854 Male, age 80, left hemisphere 12.4
1781 Male, age 74, unknown 11.4
2290 Female, age 72, unknown 11.3
1857 Female, age 85, left hemisphere 10.9
2846 Female, age 79, unknown 10.6
2288 Male, age 75, left hemisphere 10.5
Claustrum
nTPM: 11.5
2198 Male, age 80, both hemispheres 12.1
2292 Female, age 85, both hemispheres 12.0
2284 Female, age 91, both hemispheres 11.9
2491 Male, age 75, both hemispheres 11.6
2645 Female, age 72, unknown 11.5
2392 Female, age 94, both hemispheres 11.4
2568 Male, age 61, both hemispheres 11.2
2196 Female, age 79, unknown 11.1
1956 Male, age 74, unknown 10.5
Globus pallidus, externus
nTPM: 14.2
1996 Male, age 80, right hemisphere 15.9
2646 Male, age 61, right hemisphere 15.0
2772 Female, age 79, unknown 14.5
2395 Male, age 75, both hemispheres 13.2
2567 Female, age 72, unknown 12.5
Globus pallidus, internus
nTPM: 13.8
2037 Male, age 80, right hemisphere 15.4
1818 Male, age 74, unknown 15.0
2483 Female, age 94, right hemisphere 14.9
2566 Female, age 72, unknown 13.3
2778 Female, age 91, both hemispheres 13.1
2111 Female, age 85, right hemisphere 12.6
2287 Male, age 75, right hemisphere 12.1
Nucleus accumbens
nTPM: 11.1
2391 Female, age 94, left hemisphere 12.4
2732 Male, age 80, right hemisphere 11.5
2824 Male, age 61, right hemisphere 11.4
2286 Male, age 75, left hemisphere 11.2
1806 Female, age 85, left hemisphere 10.9
1856 Female, age 91, right hemisphere 10.6
2698 Female, age 72, unknown 10.4
1783 Male, age 74, unknown 10.3
Nucleus basalis of Meynert
nTPM: 12.7
2569 Male, age 61, both hemispheres 15.6
2393 Male, age 80, right hemisphere 12.0
2484 Female, age 94, left hemisphere 11.6
2821 Male, age 75, both hemispheres 11.6
Nucleus of the diagonal band
nTPM: 10.2
1812 Female, age 91, both hemispheres 10.7
2775 Male, age 80, right hemisphere 10.6
1979 Male, age 74, unknown 10.5
2195 Female, age 85, both hemispheres 9.6
2029 Male, age 61, right hemisphere 9.5
Olfactory tubercle
nTPM: 10.8
2856 Male, age 75, right hemisphere 11.2
1998 Female, age 91, both hemispheres 11.0
1846 Male, age 80, right hemisphere 10.7
2487 Female, age 94, left hemisphere 10.2
Putamen
nTPM: 11.8
2647 Male, age 75, left hemisphere 13.3
2482 Female, age 94, left hemisphere 12.7
2489 Female, age 72, unknown 11.9
1937 Female, age 91, right hemisphere 11.5
1838 Male, age 80, right hemisphere 11.2
2466 Female, age 79, unknown 11.0
1829 Male, age 74, unknown 10.7
Septal nuclei
nTPM: 10.7
2199 Male, age 80, right hemisphere 12.5
2009 Female, age 91, both hemispheres 11.2
2394 Male, age 61, left hemisphere 10.9
2031 Female, age 72, unknown 10.6
2059 Female, age 85, both hemispheres 10.3
2629 Female, age 94, right hemisphere 10.0
1960 Male, age 74, unknown 9.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 73.1
Min nTPM: 0.9
Std nTPM: 6.8
Median nTPM: 8.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 73.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 35.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 34.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 33.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 28.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 27.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 26.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 25.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 22.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 21.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 21.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.8
Samples: 246

Max nTPM: 92.0
Min nTPM: 1.6
Std nTPM: 10.2
Median nTPM: 6.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 92.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 60.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 59.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 54.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 48.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 45.7
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 38.4
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 37.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 32.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 32.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 29.1
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Brain - Putamen (basal ganglia)
Average nTPM: 11.5
Samples: 205

Max nTPM: 48.1
Min nTPM: 3.3
Std nTPM: 7.4
Median nTPM: 9.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 48.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 43.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 42.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 36.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 34.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 32.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 31.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 31.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 28.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 27.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 26.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.5
FF:10164-103B2 76 years, female 3.5
Globus pallidus
Scaled Tags Per Million: 2.7
FF:10161-103A8 76 years, female 3.9
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 3.8
FF:10037-101F1 23-56 years, mixed 3.8
Putamen
Scaled Tags Per Million: 1.6
FF:10176-103C5 60 years, female 1.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.8
Pig sample Sample description nTPM
Caudate
nTPM: 2.6
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.7
Sample A Female 2.6
Sample B Female 2.8
Sample C Male 3.2
Sample D Male 1.7
Putamen
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.0
Sample A Female 3.1
Sample B Female 2.0
Sample C Male 3.1
Sample D Male 2.8
Septum
nTPM: 2.0
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.5
Sample A Female 2.2
Sample B Female 2.2
Sample C Male 1.9
Sample D Male 1.5
Ventral pallidum
nTPM: 2.2
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 2.6
Sample C Male 2.5
Sample D Male 1.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.3
Samples: 4

Max nTPM: 5.0
Min nTPM: 1.7
Sample A Male 2.0
Sample B Male 4.6
Sample C Female 1.7
Sample D Female 5.0
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.7
Sample A Male 3.7
Sample B Male 4.0
Sample C Female 3.7
Sample D Female 4.1
Ventral forebrain
nTPM: 3.1
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.1
Sample A Male 2.1
Sample B Male 3.5
Sample C Female 3.1
Sample D Female 3.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
67815939 Antisense, RP_040920_02_B03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.2
67815939 Antisense, RP_040920_02_B03, Mouse strain C57BL/6J (56 days, male) 0.2

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