MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA:45.6 nTPM
GTEx:48.7 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:15.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.7
2019 Male, age 18, unknown 44.7
2219 Male, age 76, both hemispheres 41.7
2411 Female, age 72, unknown 41.6
2586 Male, age 75, left hemisphere 41.6
2666 Male, age 74, left hemisphere 41.3
1827 Male, age 72, unknown 41.0
1830 Male, age 51, unknown 39.6
1833 Male, age 53, unknown 38.6
1870 Female, age 42, unknown 38.5
2828 Female, age 72, unknown 38.0
Dorsal raphe nucleus
nTPM: 41.4
2298 Female, age 72, unknown 43.6
1828 Male, age 53, unknown 42.5
2047 Male, age 72, unknown 41.8
2016 Female, age 72, unknown 39.7
2750 Male, age 76, both hemispheres 39.7
Inferior colliculus
nTPM: 41.0
2097 Female, age 72, unknown 42.3
1848 Female, age 42, unknown 41.2
1890 Male, age 53, unknown 40.8
2849 Male, age 72, unknown 39.5
Median raphe nucleus
nTPM: 40.5
2220 Male, age 76, midline 40.5
Pedunculopontine tegmental nucleus
nTPM: 41.2
2334 Male, age 80, both hemispheres 44.1
1921 Female, age 85, both hemispheres 41.7
2338 Male, age 61, both hemispheres 37.8
Periaquaductal grey, anterior
nTPM: 42.0
2502 Female, age 75, unknown 43.2
1947 Male, age 18, unknown 41.6
1795 Male, age 51, unknown 41.4
Periaquaductal grey, dorsal
nTPM: 38.3
1840 Male, age 53, unknown 40.0
1831 Male, age 72, unknown 38.8
2464 Female, age 72, unknown 37.4
2850 Male, age 76, both hemispheres 36.9
Periaquaductal grey, lateral
nTPM: 38.0
2272 Male, age 74, both hemispheres 39.5
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 37.0
Pretectal area
nTPM: 41.1
2007 Male, age 72, unknown 44.9
1817 Female, age 42, unknown 44.0
1944 Female, age 72, unknown 43.6
1815 Male, age 53, unknown 41.9
1816 Male, age 51, unknown 41.8
2224 Female, age 72, unknown 41.1
2667 Female, age 75, unknown 41.1
2825 Male, age 18, unknown 39.8
2273 Male, age 74, both hemispheres 39.5
2407 Male, age 75, both hemispheres 39.0
2316 Male, age 76, right hemisphere 35.9
Red nucleus
nTPM: 40.6
1821 Female, age 72, unknown 42.9
2785 Male, age 18, unknown 42.2
2725 Female, age 75, unknown 41.8
2227 Male, age 72, unknown 40.8
2769 Male, age 72, unknown 40.7
1865 Male, age 51, unknown 40.2
2588 Male, age 74, left hemisphere 40.1
1954 Female, age 42, unknown 40.0
2503 Female, age 72, unknown 40.0
1904 Male, age 53, unknown 39.9
2823 Male, age 76, right hemisphere 39.6
2584 Male, age 75, left hemisphere 38.5
Substantia nigra
nTPM: 45.6
1916 Female, age 42, unknown 53.8
2409 Female, age 72, unknown 52.9
2665 Male, age 74, both hemispheres 48.8
1851 Male, age 51, unknown 47.8
1941 Male, age 53, unknown 47.7
1889 Female, age 72, unknown 43.7
2241 Male, age 72, unknown 42.7
2699 Male, age 18, unknown 41.2
2583 Male, age 75, right hemisphere 39.7
2590 Female, age 75, unknown 37.9
Superior colliculus
nTPM: 39.8
2668 Female, age 75, unknown 44.4
2087 Female, age 72, unknown 41.3
1839 Male, age 51, unknown 40.6
1796 Male, age 53, unknown 40.1
1895 Male, age 76, right hemisphere 40.0
2261 Male, age 18, unknown 39.6
2664 Male, age 75, both hemispheres 39.1
1913 Female, age 42, unknown 38.4
1995 Male, age 72, unknown 37.6
2587 Male, age 74, left hemisphere 37.2
Ventral tegmental area
nTPM: 41.9
1915 Female, age 42, unknown 45.8
2410 Female, age 72, unknown 44.9
2218 Male, age 76, both hemispheres 42.2
2223 Female, age 72, unknown 40.7
1942 Male, age 51, unknown 39.6
2021 Male, age 53, unknown 38.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.7
Samples: 139

Max nTPM: 132.3
Min nTPM: 16.8
Std nTPM: 19.8
Median nTPM: 45.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 132.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 98.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 96.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 95.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 91.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 89.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 85.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 84.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 81.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 79.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 79.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.1
Pig sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 29.7
Min nTPM: 21.3
Sample A Female 29.7
Sample B Female 22.3
Sample C Male 22.0
Sample D Male 21.3
Periaqueductal gray
nTPM: 18.4
Samples: 3

Max nTPM: 20.0
Min nTPM: 16.1
Sample B Female 19.1
Sample C Male 20.0
Sample D Male 16.1
Substantia nigra
nTPM: 22.8
Samples: 4

Max nTPM: 33.0
Min nTPM: 16.2
Sample A Female 33.0
Sample B Female 19.5
Sample C Male 22.6
Sample D Male 16.2
Superior colliculi
nTPM: 26.2
Samples: 4

Max nTPM: 31.5
Min nTPM: 21.0
Sample A Female 31.5
Sample B Female 24.8
Sample C Male 27.3
Sample D Male 21.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.1
Sample A Male 18.3
Sample B Male 15.6
Sample C Female 14.4
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68545887 Antisense, RP_050120_01_F07, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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