BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:0.2 nTPM
HPA:0.2 nTPM
GTEx:0.9 nTPM
FANTOM5:0.2 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:4.8 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.1
2481 Female, age 94, left hemisphere 0.2
1781 Male, age 74, unknown 0.1
1854 Male, age 80, left hemisphere 0.1
1857 Female, age 85, left hemisphere 0.1
2288 Male, age 75, left hemisphere 0.1
2289 Male, age 61, right hemisphere 0.1
2290 Female, age 72, unknown 0.1
2846 Female, age 79, unknown 0.1
Claustrum
nTPM: 0.1
1956 Male, age 74, unknown 0.1
2196 Female, age 79, unknown 0.1
2198 Male, age 80, both hemispheres 0.1
2284 Female, age 91, both hemispheres 0.1
2292 Female, age 85, both hemispheres 0.1
2392 Female, age 94, both hemispheres 0.1
2491 Male, age 75, both hemispheres 0.1
2568 Male, age 61, both hemispheres 0.1
2645 Female, age 72, unknown 0.1
Globus pallidus, externus
nTPM: 0.2
2395 Male, age 75, both hemispheres 0.3
2567 Female, age 72, unknown 0.3
2772 Female, age 79, unknown 0.3
1996 Male, age 80, right hemisphere 0.1
2646 Male, age 61, right hemisphere 0.1
Globus pallidus, internus
nTPM: 0.1
1818 Male, age 74, unknown 0.1
2037 Male, age 80, right hemisphere 0.1
2111 Female, age 85, right hemisphere 0.1
2287 Male, age 75, right hemisphere 0.1
2483 Female, age 94, right hemisphere 0.1
2566 Female, age 72, unknown 0.1
2778 Female, age 91, both hemispheres 0.1
Nucleus accumbens
nTPM: 0.1
1783 Male, age 74, unknown 0.1
1806 Female, age 85, left hemisphere 0.1
1856 Female, age 91, right hemisphere 0.1
2286 Male, age 75, left hemisphere 0.1
2391 Female, age 94, left hemisphere 0.1
2698 Female, age 72, unknown 0.1
2732 Male, age 80, right hemisphere 0.1
2824 Male, age 61, right hemisphere 0.1
Nucleus basalis of Meynert
nTPM: 0.1
2393 Male, age 80, right hemisphere 0.1
2484 Female, age 94, left hemisphere 0.1
2569 Male, age 61, both hemispheres 0.1
2821 Male, age 75, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.2
1979 Male, age 74, unknown 0.2
2195 Female, age 85, both hemispheres 0.2
2775 Male, age 80, right hemisphere 0.2
1812 Female, age 91, both hemispheres 0.1
2029 Male, age 61, right hemisphere 0.1
Olfactory tubercle
nTPM: 0.1
1846 Male, age 80, right hemisphere 0.1
1998 Female, age 91, both hemispheres 0.1
2487 Female, age 94, left hemisphere 0.1
2856 Male, age 75, right hemisphere 0.1
Putamen
nTPM: 0.1
1829 Male, age 74, unknown 0.1
1838 Male, age 80, right hemisphere 0.1
1937 Female, age 91, right hemisphere 0.1
2466 Female, age 79, unknown 0.1
2482 Female, age 94, left hemisphere 0.1
2489 Female, age 72, unknown 0.1
2647 Male, age 75, left hemisphere 0.1
Septal nuclei
nTPM: 0.1
1960 Male, age 74, unknown 0.2
2199 Male, age 80, right hemisphere 0.2
2009 Female, age 91, both hemispheres 0.1
2031 Female, age 72, unknown 0.1
2059 Female, age 85, both hemispheres 0.1
2394 Male, age 61, left hemisphere 0.1
2629 Female, age 94, right hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 3.0
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 2.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 2.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 2.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 2.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.8
Samples: 246

Max nTPM: 3.4
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 3.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 2.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 1.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 1.8
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 1.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 1.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 1.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 1.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 1.6
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 1.6
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 1.6
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Brain - Putamen (basal ganglia)
Average nTPM: 0.6
Samples: 205

Max nTPM: 2.8
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 2.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 2.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 2.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 1.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 1.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 1.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 1.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.1
FF:10161-103A8 76 years, female 0.3
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.2
FF:10037-101F1 23-56 years, mixed 0.2
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.4
Pig sample Sample description nTPM
Caudate
nTPM: 1.4
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 1.4
Sample C Male 1.4
Sample D Male 1.4
Putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.0
Sample A Female 1.0
Sample B Female 1.4
Sample C Male 1.0
Sample D Male 1.3
Septum
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.9
Sample A Female 1.1
Sample B Female 1.2
Sample C Male 0.9
Sample D Male 1.3
Ventral pallidum
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.9
Sample A Female 1.3
Sample B Female 1.1
Sample C Male 0.9
Sample D Male 1.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.5
Samples: 4

Max nTPM: 6.0
Min nTPM: 1.2
Sample A Male 2.9
Sample B Male 1.2
Sample C Female 3.7
Sample D Female 6.0
Septum
nTPM: 4.9
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.9
Sample A Male 3.9
Sample B Male 4.6
Sample C Female 4.8
Sample D Female 6.1
Ventral forebrain
nTPM: 3.0
Samples: 4

Max nTPM: 3.0
Min nTPM: 2.8
Sample A Male 3.0
Sample B Male 3.0
Sample C Female 3.0
Sample D Female 2.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70429226 Antisense, RP_050614_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70429226 Antisense, RP_050614_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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