HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:19.5 nTPM
HPA:19.5 nTPM
GTEx:21.0 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:31.7 nTPM
Mouse:25.0 nTPM
Allen mouse:6.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040252
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.5
Sample id Sample description nTPM
Hippocampus
nTPM: 17.8
1911 Female, age 85, right hemisphere 20.3
2621 Female, age 67, right hemisphere 19.1
1855 Male, age 76, left hemisphere 17.3
2529 Female, age 94, left hemisphere 17.3
2148 Female, age 91, left hemisphere 16.6
1898 Male, age 80, left hemisphere 16.1
Dentate gyrus
nTPM: 16.7
2531 Female, age 67, both hemispheres 19.7
1927 Female, age 91, both hemispheres 19.5
2246 Female, age 85, both hemispheres 18.1
2530 Female, age 94, left hemisphere 14.8
2528 Male, age 74, both hemispheres 14.6
2010 Male, age 76, both hemispheres 13.8
Entorhinal gyrus
nTPM: 16.6
1938 Female, age 85, left hemisphere 19.3
2686 Male, age 75, right hemisphere 18.3
2613 Female, age 94, left hemisphere 17.8
1787 Male, age 76, left hemisphere 15.4
2117 Female, age 91, right hemisphere 14.8
2764 Male, age 80, right hemisphere 13.8
Hippocampus, CA1
nTPM: 18.4
2749 Male, age 80, left hemisphere 21.6
1873 Female, age 85, both hemispheres 19.4
2045 Male, age 76, both hemispheres 18.7
2527 Male, age 74, both hemispheres 17.1
2082 Female, age 91, right hemisphere 15.0
Hippocampus, CA2
nTPM: 15.9
1892 Male, age 76, both hemispheres 17.5
1940 Female, age 85, left hemisphere 16.7
2113 Female, age 91, right hemisphere 16.0
2249 Male, age 74, both hemispheres 15.6
2437 Female, age 94, left hemisphere 15.1
1963 Male, age 80, left hemisphere 14.6
Hippocampus, CA3
nTPM: 19.3
2137 Male, age 80, left hemisphere 25.6
2620 Female, age 94, left hemisphere 20.8
1891 Female, age 85, both hemispheres 19.7
2861 Female, age 67, both hemispheres 17.6
1867 Male, age 76, both hemispheres 16.7
2436 Male, age 74, both hemispheres 15.0
Parahippocampal cortex
nTPM: 18.6
2693 Female, age 94, both hemispheres 21.0
1850 Male, age 80, both hemispheres 20.5
2622 Female, age 67, right hemisphere 20.5
2532 Female, age 72, left hemisphere 19.2
1933 Female, age 85, both hemispheres 18.8
2245 Female, age 91, both hemispheres 18.7
2692 Male, age 74, both hemispheres 18.4
2250 Female, age 67, right hemisphere 17.8
1990 Female, age 91, right hemisphere 15.9
2018 Male, age 76, both hemispheres 15.3
Perirhinal gyrus
nTPM: 19.5
2848 Male, age 76, right hemisphere 23.1
1841 Female, age 85, right hemisphere 22.2
1794 Male, age 80, right hemisphere 17.9
1847 Female, age 91, left hemisphere 17.2
2521 Female, age 94, right hemisphere 17.1
Subiculum
nTPM: 17.5
2438 Female, age 94, left hemisphere 21.6
1901 Male, age 80, both hemispheres 20.0
1977 Female, age 85, both hemispheres 17.3
2619 Male, age 74, both hemispheres 15.8
2729 Female, age 91, right hemisphere 15.8
2042 Male, age 76, both hemispheres 14.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.0
Samples: 197

Max nTPM: 33.5
Min nTPM: 11.4
Std nTPM: 3.6
Median nTPM: 20.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 33.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 32.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 31.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 30.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 29.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 28.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 27.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 27.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 27.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 27.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 26.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.9
FF:10153-102I9 76 years, female 47.1
FF:10169-103B7 60 years, female 38.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.7
Samples: 4

Max nTPM: 33.5
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 31.6
Sample C Male 33.5
Sample D Male 31.3
Entorhinal cortex
nTPM: 31.2
Samples: 4

Max nTPM: 32.7
Min nTPM: 29.2
Sample A Female 32.7
Sample B Female 29.2
Sample C Male 30.1
Sample D Male 32.6
Subiculum
nTPM: 31.5
Samples: 4

Max nTPM: 32.8
Min nTPM: 30.4
Sample A Female 30.4
Sample B Female 31.3
Sample C Male 32.8
Sample D Male 31.3
Ventral hippocampus
nTPM: 30.4
Samples: 4

Max nTPM: 32.9
Min nTPM: 25.8
Sample A Female 30.6
Sample B Female 32.3
Sample C Male 25.8
Sample D Male 32.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 23.0
Sample A Male 25.8
Sample B Male 26.6
Sample C Female 24.5
Sample D Female 23.0
Hippocampal formation
nTPM: 24.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 21.8
Sample A Male 25.3
Sample B Male 27.2
Sample C Female 22.1
Sample D Female 21.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
70474839 Antisense, RP_050623_01_B04, Mouse strain C57BL/6J (56 days, male) 6.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.