MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA:26.1 nTPM
GTEx:27.1 nTPM
FANTOM5:80.4 Scaled Tags Per Million
Pig:40.6 nTPM
Mouse:123.9 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2586 Male, age 75, left hemisphere 29.2
2666 Male, age 74, left hemisphere 24.6
1827 Male, age 72, unknown 24.2
2019 Male, age 18, unknown 23.0
2828 Female, age 72, unknown 23.0
1833 Male, age 53, unknown 22.9
1870 Female, age 42, unknown 21.5
2411 Female, age 72, unknown 21.4
1830 Male, age 51, unknown 20.8
2219 Male, age 76, both hemispheres 20.5
Dorsal raphe nucleus
nTPM: 22.3
1828 Male, age 53, unknown 23.9
2047 Male, age 72, unknown 23.2
2016 Female, age 72, unknown 22.4
2298 Female, age 72, unknown 21.9
2750 Male, age 76, both hemispheres 20.0
Inferior colliculus
nTPM: 22.6
2849 Male, age 72, unknown 25.2
1848 Female, age 42, unknown 22.7
1890 Male, age 53, unknown 22.1
2097 Female, age 72, unknown 20.6
Median raphe nucleus
nTPM: 20.8
2220 Male, age 76, midline 20.8
Pedunculopontine tegmental nucleus
nTPM: 20.7
2334 Male, age 80, both hemispheres 21.4
1921 Female, age 85, both hemispheres 21.2
2338 Male, age 61, both hemispheres 19.4
Periaquaductal grey, anterior
nTPM: 23.4
1795 Male, age 51, unknown 23.5
2502 Female, age 75, unknown 23.4
1947 Male, age 18, unknown 23.3
Periaquaductal grey, dorsal
nTPM: 23.6
2850 Male, age 76, both hemispheres 25.5
1840 Male, age 53, unknown 24.1
1831 Male, age 72, unknown 23.0
2464 Female, age 72, unknown 22.0
Periaquaductal grey, lateral
nTPM: 22.9
2140 Male, age 76, both hemispheres 23.8
2272 Male, age 74, both hemispheres 22.8
2053 Male, age 18, unknown 22.3
Pretectal area
nTPM: 24.6
1816 Male, age 51, unknown 28.3
1817 Female, age 42, unknown 27.7
1944 Female, age 72, unknown 26.5
1815 Male, age 53, unknown 25.5
2007 Male, age 72, unknown 25.2
2667 Female, age 75, unknown 24.2
2407 Male, age 75, both hemispheres 23.8
2825 Male, age 18, unknown 23.7
2316 Male, age 76, right hemisphere 23.1
2224 Female, age 72, unknown 21.6
2273 Male, age 74, both hemispheres 21.0
Red nucleus
nTPM: 23.0
2588 Male, age 74, left hemisphere 24.4
1821 Female, age 72, unknown 23.7
2785 Male, age 18, unknown 23.7
2584 Male, age 75, left hemisphere 23.5
1904 Male, age 53, unknown 23.2
2725 Female, age 75, unknown 23.0
2227 Male, age 72, unknown 22.9
1865 Male, age 51, unknown 22.7
1954 Female, age 42, unknown 22.6
2823 Male, age 76, right hemisphere 22.1
2503 Female, age 72, unknown 22.0
2769 Male, age 72, unknown 21.7
Substantia nigra
nTPM: 26.1
1916 Female, age 42, unknown 30.3
2665 Male, age 74, both hemispheres 28.0
1851 Male, age 51, unknown 27.3
2583 Male, age 75, right hemisphere 27.3
2699 Male, age 18, unknown 26.0
2241 Male, age 72, unknown 24.9
1889 Female, age 72, unknown 24.7
2590 Female, age 75, unknown 24.4
1941 Male, age 53, unknown 24.2
2409 Female, age 72, unknown 23.6
Superior colliculus
nTPM: 24.1
2664 Male, age 75, both hemispheres 30.0
2668 Female, age 75, unknown 25.8
2261 Male, age 18, unknown 25.0
2087 Female, age 72, unknown 24.7
1796 Male, age 53, unknown 24.1
1895 Male, age 76, right hemisphere 23.0
2587 Male, age 74, left hemisphere 22.8
1913 Female, age 42, unknown 22.4
1839 Male, age 51, unknown 21.9
1995 Male, age 72, unknown 21.7
Ventral tegmental area
nTPM: 24.2
2218 Male, age 76, both hemispheres 25.0
1915 Female, age 42, unknown 24.7
1942 Male, age 51, unknown 24.3
2410 Female, age 72, unknown 24.2
2223 Female, age 72, unknown 23.8
2021 Male, age 53, unknown 23.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.1
Samples: 139

Max nTPM: 42.9
Min nTPM: 12.3
Std nTPM: 4.0
Median nTPM: 26.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 42.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 38.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 38.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 36.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 34.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 33.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 33.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 32.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 32.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 32.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.4
FF:10158-103A5 76 years, female 80.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.6
Pig sample Sample description nTPM
Midbrain
nTPM: 40.6
Samples: 4

Max nTPM: 49.7
Min nTPM: 35.5
Sample A Female 49.7
Sample B Female 35.5
Sample C Male 38.8
Sample D Male 38.3
Periaqueductal gray
nTPM: 36.0
Samples: 3

Max nTPM: 39.4
Min nTPM: 33.3
Sample B Female 35.2
Sample C Male 39.4
Sample D Male 33.3
Substantia nigra
nTPM: 39.7
Samples: 4

Max nTPM: 46.1
Min nTPM: 33.4
Sample A Female 46.1
Sample B Female 33.4
Sample C Male 44.0
Sample D Male 35.1
Superior colliculi
nTPM: 38.7
Samples: 4

Max nTPM: 42.2
Min nTPM: 32.4
Sample A Female 42.2
Sample B Female 32.4
Sample C Male 38.4
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.9
Samples: 4

Max nTPM: 126.1
Min nTPM: 122.4
Sample A Male 122.4
Sample B Male 126.1
Sample C Female 123.3
Sample D Female 123.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
100146071 Antisense, RP_110421_02_F09, Mouse strain C57BL/6J (56 days, male) 4.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.