MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.5 nTPM
HPA:67.5 nTPM
GTEx:31.2 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:16.9 nTPM
Mouse:20.3 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.9
2586 Male, age 75, left hemisphere 74.0
1827 Male, age 72, unknown 64.9
2828 Female, age 72, unknown 64.7
2666 Male, age 74, left hemisphere 61.8
2411 Female, age 72, unknown 59.1
1870 Female, age 42, unknown 59.0
2219 Male, age 76, both hemispheres 57.8
1833 Male, age 53, unknown 57.2
1830 Male, age 51, unknown 55.4
2019 Male, age 18, unknown 54.8
Dorsal raphe nucleus
nTPM: 60.9
2047 Male, age 72, unknown 66.3
2298 Female, age 72, unknown 63.0
2016 Female, age 72, unknown 60.0
1828 Male, age 53, unknown 57.9
2750 Male, age 76, both hemispheres 57.1
Inferior colliculus
nTPM: 62.1
2097 Female, age 72, unknown 64.2
2849 Male, age 72, unknown 63.1
1848 Female, age 42, unknown 61.5
1890 Male, age 53, unknown 59.5
Median raphe nucleus
nTPM: 63.2
2220 Male, age 76, midline 63.2
Pedunculopontine tegmental nucleus
nTPM: 56.9
1921 Female, age 85, both hemispheres 59.3
2334 Male, age 80, both hemispheres 57.2
2338 Male, age 61, both hemispheres 54.1
Periaquaductal grey, anterior
nTPM: 67.5
2502 Female, age 75, unknown 69.4
1795 Male, age 51, unknown 68.5
1947 Male, age 18, unknown 64.5
Periaquaductal grey, dorsal
nTPM: 64.2
1840 Male, age 53, unknown 70.7
1831 Male, age 72, unknown 63.3
2464 Female, age 72, unknown 62.9
2850 Male, age 76, both hemispheres 59.8
Periaquaductal grey, lateral
nTPM: 63.2
2140 Male, age 76, both hemispheres 66.7
2053 Male, age 18, unknown 64.7
2272 Male, age 74, both hemispheres 58.0
Pretectal area
nTPM: 62.4
1816 Male, age 51, unknown 67.3
2825 Male, age 18, unknown 66.7
2224 Female, age 72, unknown 65.7
2407 Male, age 75, both hemispheres 64.2
1944 Female, age 72, unknown 63.7
1815 Male, age 53, unknown 60.9
2007 Male, age 72, unknown 60.6
2316 Male, age 76, right hemisphere 60.6
1817 Female, age 42, unknown 60.4
2667 Female, age 75, unknown 58.8
2273 Male, age 74, both hemispheres 57.5
Red nucleus
nTPM: 54.8
2584 Male, age 75, left hemisphere 59.8
2588 Male, age 74, left hemisphere 57.8
2785 Male, age 18, unknown 56.2
2769 Male, age 72, unknown 55.4
2227 Male, age 72, unknown 55.0
2503 Female, age 72, unknown 54.8
1954 Female, age 42, unknown 54.2
1904 Male, age 53, unknown 53.4
2725 Female, age 75, unknown 53.4
2823 Male, age 76, right hemisphere 53.3
1865 Male, age 51, unknown 52.6
1821 Female, age 72, unknown 51.3
Substantia nigra
nTPM: 59.1
2665 Male, age 74, both hemispheres 64.9
2590 Female, age 75, unknown 62.8
2583 Male, age 75, right hemisphere 61.9
1916 Female, age 42, unknown 59.3
1851 Male, age 51, unknown 59.1
1889 Female, age 72, unknown 58.9
2699 Male, age 18, unknown 58.3
1941 Male, age 53, unknown 56.7
2241 Male, age 72, unknown 55.1
2409 Female, age 72, unknown 54.5
Superior colliculus
nTPM: 62.1
2664 Male, age 75, both hemispheres 74.6
1796 Male, age 53, unknown 67.7
2087 Female, age 72, unknown 65.2
2261 Male, age 18, unknown 63.7
2668 Female, age 75, unknown 61.4
1839 Male, age 51, unknown 60.4
2587 Male, age 74, left hemisphere 59.1
1995 Male, age 72, unknown 56.7
1913 Female, age 42, unknown 56.6
1895 Male, age 76, right hemisphere 56.0
Ventral tegmental area
nTPM: 61.8
1942 Male, age 51, unknown 66.4
2021 Male, age 53, unknown 65.9
1915 Female, age 42, unknown 61.2
2223 Female, age 72, unknown 61.0
2218 Male, age 76, both hemispheres 59.7
2410 Female, age 72, unknown 56.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.2
Samples: 139

Max nTPM: 52.0
Min nTPM: 8.3
Std nTPM: 9.0
Median nTPM: 31.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 52.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 51.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 49.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 49.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 49.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 47.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 47.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 46.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 46.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 46.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 45.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.9
Pig sample Sample description nTPM
Midbrain
nTPM: 16.9
Samples: 4

Max nTPM: 22.6
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 15.7
Sample C Male 18.9
Sample D Male 22.6
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 19.1
Min nTPM: 13.8
Sample B Female 15.0
Sample C Male 19.1
Sample D Male 13.8
Substantia nigra
nTPM: 14.0
Samples: 4

Max nTPM: 17.1
Min nTPM: 9.7
Sample A Female 16.5
Sample B Female 12.5
Sample C Male 17.1
Sample D Male 9.7
Superior colliculi
nTPM: 13.8
Samples: 4

Max nTPM: 17.6
Min nTPM: 11.4
Sample A Female 17.6
Sample B Female 11.4
Sample C Male 12.1
Sample D Male 14.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 21.5
Min nTPM: 19.3
Sample A Male 21.5
Sample B Male 20.1
Sample C Female 19.3
Sample D Female 20.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
69873355 Antisense, RP_050512_01_A12, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.