BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:34.1 nTPM
HPA:34.1 nTPM
GTEx:31.5 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:19.6 nTPM
Allen mouse:5.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA060760
Glial cells Medium
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 34.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.3
2290 Female, age 72, unknown 33.5
1857 Female, age 85, left hemisphere 31.0
2288 Male, age 75, left hemisphere 30.8
2289 Male, age 61, right hemisphere 30.8
1854 Male, age 80, left hemisphere 30.1
1781 Male, age 74, unknown 30.0
2846 Female, age 79, unknown 29.9
2481 Female, age 94, left hemisphere 26.6
Claustrum
nTPM: 33.7
2196 Female, age 79, unknown 36.0
2645 Female, age 72, unknown 34.9
2198 Male, age 80, both hemispheres 34.7
2568 Male, age 61, both hemispheres 34.6
2292 Female, age 85, both hemispheres 34.2
2284 Female, age 91, both hemispheres 34.0
1956 Male, age 74, unknown 32.3
2491 Male, age 75, both hemispheres 32.3
2392 Female, age 94, both hemispheres 29.9
Globus pallidus, externus
nTPM: 34.1
2646 Male, age 61, right hemisphere 39.7
2567 Female, age 72, unknown 37.7
1996 Male, age 80, right hemisphere 32.3
2395 Male, age 75, both hemispheres 30.6
2772 Female, age 79, unknown 30.3
Globus pallidus, internus
nTPM: 33.5
2566 Female, age 72, unknown 35.7
2483 Female, age 94, right hemisphere 35.2
2287 Male, age 75, right hemisphere 34.5
2037 Male, age 80, right hemisphere 33.7
2778 Female, age 91, both hemispheres 32.3
1818 Male, age 74, unknown 32.1
2111 Female, age 85, right hemisphere 30.8
Nucleus accumbens
nTPM: 31.6
1783 Male, age 74, unknown 35.6
1806 Female, age 85, left hemisphere 32.7
1856 Female, age 91, right hemisphere 32.6
2824 Male, age 61, right hemisphere 32.5
2698 Female, age 72, unknown 31.8
2286 Male, age 75, left hemisphere 30.0
2732 Male, age 80, right hemisphere 29.0
2391 Female, age 94, left hemisphere 28.9
Nucleus basalis of Meynert
nTPM: 31.9
2569 Male, age 61, both hemispheres 39.8
2484 Female, age 94, left hemisphere 31.0
2821 Male, age 75, both hemispheres 28.4
2393 Male, age 80, right hemisphere 28.2
Nucleus of the diagonal band
nTPM: 30.8
1812 Female, age 91, both hemispheres 32.4
2029 Male, age 61, right hemisphere 32.0
2195 Female, age 85, both hemispheres 30.6
2775 Male, age 80, right hemisphere 30.2
1979 Male, age 74, unknown 28.7
Olfactory tubercle
nTPM: 30.2
1998 Female, age 91, both hemispheres 32.1
2856 Male, age 75, right hemisphere 30.4
1846 Male, age 80, right hemisphere 29.9
2487 Female, age 94, left hemisphere 28.2
Putamen
nTPM: 31.6
2647 Male, age 75, left hemisphere 36.0
1838 Male, age 80, right hemisphere 32.9
1829 Male, age 74, unknown 32.3
2489 Female, age 72, unknown 31.3
2466 Female, age 79, unknown 31.1
1937 Female, age 91, right hemisphere 30.3
2482 Female, age 94, left hemisphere 27.5
Septal nuclei
nTPM: 30.0
1960 Male, age 74, unknown 33.1
2031 Female, age 72, unknown 31.2
2059 Female, age 85, both hemispheres 31.1
2394 Male, age 61, left hemisphere 30.0
2629 Female, age 94, right hemisphere 29.2
2009 Female, age 91, both hemispheres 28.2
2199 Male, age 80, right hemisphere 26.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.0
Samples: 246

Max nTPM: 55.6
Min nTPM: 11.1
Std nTPM: 5.6
Median nTPM: 26.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 55.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 49.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 41.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 40.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 40.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 40.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 39.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 38.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 38.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 37.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 36.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.3
Samples: 246

Max nTPM: 53.3
Min nTPM: 16.1
Std nTPM: 6.4
Median nTPM: 28.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 53.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 47.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 47.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 46.4
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 45.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 45.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 44.8
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 44.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 43.9
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 42.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 42.0
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Brain - Putamen (basal ganglia)
Average nTPM: 31.5
Samples: 205

Max nTPM: 57.6
Min nTPM: 18.8
Std nTPM: 6.1
Median nTPM: 30.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 57.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 49.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 48.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 46.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 46.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 45.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 43.2
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 42.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 42.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 42.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 42.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.7
FF:10164-103B2 76 years, female 29.7
Globus pallidus
Scaled Tags Per Million: 25.4
FF:10161-103A8 76 years, female 28.0
FF:10175-103C4 60 years, female 22.8
Nucleus accumbens
Scaled Tags Per Million: 33.5
FF:10037-101F1 23-56 years, mixed 33.5
Putamen
Scaled Tags Per Million: 35.0
FF:10176-103C5 60 years, female 35.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Caudate
nTPM: 15.9
Samples: 4

Max nTPM: 18.3
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 17.5
Sample C Male 18.3
Sample D Male 14.5
Putamen
nTPM: 16.6
Samples: 4

Max nTPM: 20.0
Min nTPM: 12.9
Sample A Female 16.1
Sample B Female 12.9
Sample C Male 17.2
Sample D Male 20.0
Septum
nTPM: 15.4
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.3
Sample A Female 14.8
Sample B Female 14.7
Sample C Male 17.7
Sample D Male 14.3
Ventral pallidum
nTPM: 16.3
Samples: 4

Max nTPM: 20.9
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 14.4
Sample C Male 20.9
Sample D Male 16.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.8
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.2
Sample A Male 19.9
Sample B Male 20.3
Sample C Female 15.2
Sample D Female 19.7
Septum
nTPM: 17.6
Samples: 4

Max nTPM: 19.7
Min nTPM: 16.1
Sample A Male 19.7
Sample B Male 17.6
Sample C Female 16.8
Sample D Female 16.1
Ventral forebrain
nTPM: 19.6
Samples: 4

Max nTPM: 21.7
Min nTPM: 18.4
Sample A Male 18.6
Sample B Male 19.8
Sample C Female 21.7
Sample D Female 18.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.9
69015518 Antisense, RP_050315_01_B06, Mouse strain C57BL/6J (56 days, male) 5.9
Pallidum
Expression energy: 5.2
69015518 Antisense, RP_050315_01_B06, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

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