MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.3 nTPM
HPA:58.3 nTPM
GTEx:46.1 nTPM
FANTOM5:91.1 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:27.7 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.0
2666 Male, age 74, left hemisphere 59.7
1833 Male, age 53, unknown 52.8
1827 Male, age 72, unknown 52.4
2828 Female, age 72, unknown 51.1
1870 Female, age 42, unknown 50.9
1830 Male, age 51, unknown 50.6
2586 Male, age 75, left hemisphere 50.4
2219 Male, age 76, both hemispheres 49.3
2411 Female, age 72, unknown 47.6
2019 Male, age 18, unknown 45.6
Dorsal raphe nucleus
nTPM: 50.3
1828 Male, age 53, unknown 50.9
2016 Female, age 72, unknown 50.6
2047 Male, age 72, unknown 50.3
2298 Female, age 72, unknown 50.3
2750 Male, age 76, both hemispheres 49.6
Inferior colliculus
nTPM: 51.1
2849 Male, age 72, unknown 59.6
1848 Female, age 42, unknown 50.5
1890 Male, age 53, unknown 47.7
2097 Female, age 72, unknown 46.5
Median raphe nucleus
nTPM: 53.2
2220 Male, age 76, midline 53.2
Pedunculopontine tegmental nucleus
nTPM: 57.2
2338 Male, age 61, both hemispheres 69.6
2334 Male, age 80, both hemispheres 53.9
1921 Female, age 85, both hemispheres 48.1
Periaquaductal grey, anterior
nTPM: 48.6
1795 Male, age 51, unknown 50.9
1947 Male, age 18, unknown 49.9
2502 Female, age 75, unknown 45.1
Periaquaductal grey, dorsal
nTPM: 54.0
1840 Male, age 53, unknown 56.7
2850 Male, age 76, both hemispheres 56.7
1831 Male, age 72, unknown 52.7
2464 Female, age 72, unknown 50.0
Periaquaductal grey, lateral
nTPM: 53.2
2272 Male, age 74, both hemispheres 53.6
2053 Male, age 18, unknown 53.4
2140 Male, age 76, both hemispheres 52.7
Pretectal area
nTPM: 50.8
2825 Male, age 18, unknown 58.6
2407 Male, age 75, both hemispheres 57.5
2224 Female, age 72, unknown 51.6
2316 Male, age 76, right hemisphere 51.0
1816 Male, age 51, unknown 50.2
1817 Female, age 42, unknown 49.8
1815 Male, age 53, unknown 49.3
2007 Male, age 72, unknown 48.9
2273 Male, age 74, both hemispheres 48.4
1944 Female, age 72, unknown 48.3
2667 Female, age 75, unknown 45.4
Red nucleus
nTPM: 49.6
2584 Male, age 75, left hemisphere 59.3
2725 Female, age 75, unknown 52.5
2769 Male, age 72, unknown 51.5
2227 Male, age 72, unknown 50.6
2823 Male, age 76, right hemisphere 49.2
1821 Female, age 72, unknown 48.8
1954 Female, age 42, unknown 48.5
1904 Male, age 53, unknown 48.2
2503 Female, age 72, unknown 47.2
1865 Male, age 51, unknown 47.0
2785 Male, age 18, unknown 46.3
2588 Male, age 74, left hemisphere 46.2
Substantia nigra
nTPM: 58.3
2665 Male, age 74, both hemispheres 70.7
2590 Female, age 75, unknown 66.8
2583 Male, age 75, right hemisphere 62.9
2699 Male, age 18, unknown 61.7
1916 Female, age 42, unknown 58.6
1941 Male, age 53, unknown 57.5
1851 Male, age 51, unknown 54.5
2241 Male, age 72, unknown 51.4
2409 Female, age 72, unknown 50.3
1889 Female, age 72, unknown 48.9
Superior colliculus
nTPM: 51.2
2664 Male, age 75, both hemispheres 58.2
2587 Male, age 74, left hemisphere 56.8
1839 Male, age 51, unknown 55.4
2668 Female, age 75, unknown 51.4
1796 Male, age 53, unknown 51.2
1913 Female, age 42, unknown 48.7
2261 Male, age 18, unknown 48.6
1895 Male, age 76, right hemisphere 48.0
2087 Female, age 72, unknown 47.2
1995 Male, age 72, unknown 46.7
Ventral tegmental area
nTPM: 52.7
1915 Female, age 42, unknown 55.8
2218 Male, age 76, both hemispheres 54.1
2021 Male, age 53, unknown 53.5
1942 Male, age 51, unknown 51.9
2410 Female, age 72, unknown 51.0
2223 Female, age 72, unknown 50.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.1
Samples: 139

Max nTPM: 105.4
Min nTPM: 14.1
Std nTPM: 15.7
Median nTPM: 44.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 105.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 91.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 80.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 78.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 78.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 74.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 71.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 71.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 70.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 70.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 68.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.1
FF:10158-103A5 76 years, female 91.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.4
Pig sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 53.2
Min nTPM: 31.1
Sample A Female 53.2
Sample B Female 49.5
Sample C Male 31.1
Sample D Male 42.7
Periaqueductal gray
nTPM: 49.4
Samples: 3

Max nTPM: 57.3
Min nTPM: 43.7
Sample B Female 47.3
Sample C Male 57.3
Sample D Male 43.7
Substantia nigra
nTPM: 45.3
Samples: 4

Max nTPM: 54.9
Min nTPM: 34.9
Sample A Female 54.9
Sample B Female 43.1
Sample C Male 48.2
Sample D Male 34.9
Superior colliculi
nTPM: 39.6
Samples: 4

Max nTPM: 54.8
Min nTPM: 27.7
Sample A Female 54.8
Sample B Female 27.7
Sample C Male 31.4
Sample D Male 44.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.7
Samples: 4

Max nTPM: 28.8
Min nTPM: 26.4
Sample A Male 28.8
Sample B Male 28.1
Sample C Female 26.4
Sample D Female 27.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
71992067 Antisense, RP_051012_04_A12, Mouse strain C57BL/6J (56 days, male) 10.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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