BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:63.1 nTPM
HPA:63.1 nTPM
GTEx:111.5 nTPM
FANTOM5:136.9 Scaled Tags Per Million
Pig:28.8 nTPM
Mouse:55.5 nTPM
Allen mouse:3.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 58.5
2290 Female, age 72, unknown 70.0
1857 Female, age 85, left hemisphere 66.3
2846 Female, age 79, unknown 63.5
1854 Male, age 80, left hemisphere 59.4
2289 Male, age 61, right hemisphere 56.6
1781 Male, age 74, unknown 54.8
2288 Male, age 75, left hemisphere 49.5
2481 Female, age 94, left hemisphere 48.2
Claustrum
nTPM: 56.2
2292 Female, age 85, both hemispheres 64.3
2196 Female, age 79, unknown 61.6
1956 Male, age 74, unknown 59.6
2645 Female, age 72, unknown 55.8
2198 Male, age 80, both hemispheres 55.5
2568 Male, age 61, both hemispheres 54.5
2491 Male, age 75, both hemispheres 52.5
2284 Female, age 91, both hemispheres 51.2
2392 Female, age 94, both hemispheres 50.9
Globus pallidus, externus
nTPM: 61.6
2567 Female, age 72, unknown 71.4
1996 Male, age 80, right hemisphere 61.9
2646 Male, age 61, right hemisphere 60.3
2772 Female, age 79, unknown 58.1
2395 Male, age 75, both hemispheres 56.3
Globus pallidus, internus
nTPM: 63.1
2111 Female, age 85, right hemisphere 75.8
2566 Female, age 72, unknown 67.5
2287 Male, age 75, right hemisphere 65.7
2778 Female, age 91, both hemispheres 62.7
2483 Female, age 94, right hemisphere 60.7
1818 Male, age 74, unknown 54.6
2037 Male, age 80, right hemisphere 54.6
Nucleus accumbens
nTPM: 62.8
1783 Male, age 74, unknown 75.4
1806 Female, age 85, left hemisphere 73.2
2824 Male, age 61, right hemisphere 66.3
2698 Female, age 72, unknown 66.1
1856 Female, age 91, right hemisphere 60.7
2391 Female, age 94, left hemisphere 55.9
2732 Male, age 80, right hemisphere 55.8
2286 Male, age 75, left hemisphere 48.9
Nucleus basalis of Meynert
nTPM: 54.8
2569 Male, age 61, both hemispheres 61.4
2484 Female, age 94, left hemisphere 56.5
2393 Male, age 80, right hemisphere 51.8
2821 Male, age 75, both hemispheres 49.4
Nucleus of the diagonal band
nTPM: 42.9
1979 Male, age 74, unknown 48.1
1812 Female, age 91, both hemispheres 44.2
2029 Male, age 61, right hemisphere 42.5
2775 Male, age 80, right hemisphere 40.4
2195 Female, age 85, both hemispheres 39.2
Olfactory tubercle
nTPM: 41.7
2487 Female, age 94, left hemisphere 42.6
1998 Female, age 91, both hemispheres 42.4
1846 Male, age 80, right hemisphere 41.4
2856 Male, age 75, right hemisphere 40.2
Putamen
nTPM: 61.7
1829 Male, age 74, unknown 72.9
2466 Female, age 79, unknown 69.2
2489 Female, age 72, unknown 66.6
1937 Female, age 91, right hemisphere 59.0
2482 Female, age 94, left hemisphere 56.5
1838 Male, age 80, right hemisphere 54.2
2647 Male, age 75, left hemisphere 53.5
Septal nuclei
nTPM: 43.2
2031 Female, age 72, unknown 49.8
2394 Male, age 61, left hemisphere 48.5
2199 Male, age 80, right hemisphere 43.0
2059 Female, age 85, both hemispheres 42.8
1960 Male, age 74, unknown 41.2
2629 Female, age 94, right hemisphere 39.3
2009 Female, age 91, both hemispheres 38.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 111.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.9
Samples: 246

Max nTPM: 178.7
Min nTPM: 25.5
Std nTPM: 34.6
Median nTPM: 85.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 178.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 174.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 173.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 172.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 172.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 163.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 160.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 158.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 158.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 153.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 149.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 111.5
Samples: 246

Max nTPM: 198.0
Min nTPM: 27.2
Std nTPM: 37.9
Median nTPM: 119.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 198.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 196.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 191.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 189.1
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 187.7
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 184.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 180.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 173.5
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 168.2
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 168.1
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 168.0
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Brain - Putamen (basal ganglia)
Average nTPM: 95.4
Samples: 205

Max nTPM: 218.8
Min nTPM: 26.0
Std nTPM: 33.7
Median nTPM: 91.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 218.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 199.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 189.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 184.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 182.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 179.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 163.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 160.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 160.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 160.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 154.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 136.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 107.2
FF:10164-103B2 76 years, female 107.2
Globus pallidus
Scaled Tags Per Million: 108.7
FF:10161-103A8 76 years, female 117.9
FF:10175-103C4 60 years, female 99.4
Nucleus accumbens
Scaled Tags Per Million: 127.2
FF:10037-101F1 23-56 years, mixed 127.2
Putamen
Scaled Tags Per Million: 136.9
FF:10176-103C5 60 years, female 136.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.8
Pig sample Sample description nTPM
Caudate
nTPM: 26.0
Samples: 4

Max nTPM: 27.9
Min nTPM: 23.0
Sample A Female 23.0
Sample B Female 27.9
Sample C Male 27.5
Sample D Male 25.6
Putamen
nTPM: 28.8
Samples: 4

Max nTPM: 30.8
Min nTPM: 25.7
Sample A Female 25.7
Sample B Female 28.1
Sample C Male 30.7
Sample D Male 30.8
Septum
nTPM: 27.7
Samples: 4

Max nTPM: 30.7
Min nTPM: 25.7
Sample A Female 26.3
Sample B Female 25.7
Sample C Male 28.1
Sample D Male 30.7
Ventral pallidum
nTPM: 27.9
Samples: 4

Max nTPM: 31.5
Min nTPM: 24.4
Sample A Female 24.4
Sample B Female 27.5
Sample C Male 31.5
Sample D Male 28.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 52.7
Samples: 4

Max nTPM: 56.2
Min nTPM: 48.2
Sample A Male 56.2
Sample B Male 53.2
Sample C Female 53.3
Sample D Female 48.2
Septum
nTPM: 31.1
Samples: 4

Max nTPM: 35.3
Min nTPM: 27.7
Sample A Male 29.3
Sample B Male 35.3
Sample C Female 32.1
Sample D Female 27.7
Ventral forebrain
nTPM: 55.5
Samples: 4

Max nTPM: 60.3
Min nTPM: 47.4
Sample A Male 60.3
Sample B Male 47.4
Sample C Female 58.5
Sample D Female 55.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
69817874 Antisense, RP_050510_03_H06, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 3.3
69817874 Antisense, RP_050510_03_H06, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

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