BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:51.9 nTPM
HPA:51.9 nTPM
GTEx:43.8 nTPM
FANTOM5:28.5 Scaled Tags Per Million
Pig:16.4 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA049059
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 51.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.3
2846 Female, age 79, unknown 47.9
2290 Female, age 72, unknown 47.6
2289 Male, age 61, right hemisphere 46.5
2481 Female, age 94, left hemisphere 46.2
1781 Male, age 74, unknown 46.1
2288 Male, age 75, left hemisphere 43.6
1857 Female, age 85, left hemisphere 43.2
1854 Male, age 80, left hemisphere 41.3
Claustrum
nTPM: 46.4
2292 Female, age 85, both hemispheres 50.0
2645 Female, age 72, unknown 47.9
2196 Female, age 79, unknown 47.0
2568 Male, age 61, both hemispheres 46.8
1956 Male, age 74, unknown 46.3
2491 Male, age 75, both hemispheres 46.2
2198 Male, age 80, both hemispheres 45.6
2284 Female, age 91, both hemispheres 44.8
2392 Female, age 94, both hemispheres 43.4
Globus pallidus, externus
nTPM: 51.9
2567 Female, age 72, unknown 57.8
2646 Male, age 61, right hemisphere 54.2
1996 Male, age 80, right hemisphere 54.0
2772 Female, age 79, unknown 47.6
2395 Male, age 75, both hemispheres 45.6
Globus pallidus, internus
nTPM: 50.5
2111 Female, age 85, right hemisphere 57.1
2778 Female, age 91, both hemispheres 51.3
2287 Male, age 75, right hemisphere 50.7
2566 Female, age 72, unknown 49.9
2483 Female, age 94, right hemisphere 49.8
2037 Male, age 80, right hemisphere 48.8
1818 Male, age 74, unknown 45.8
Nucleus accumbens
nTPM: 43.5
1806 Female, age 85, left hemisphere 47.7
2732 Male, age 80, right hemisphere 47.4
1783 Male, age 74, unknown 46.7
2286 Male, age 75, left hemisphere 43.6
2698 Female, age 72, unknown 43.5
2391 Female, age 94, left hemisphere 42.7
2824 Male, age 61, right hemisphere 39.6
1856 Female, age 91, right hemisphere 37.3
Nucleus basalis of Meynert
nTPM: 46.8
2569 Male, age 61, both hemispheres 56.1
2484 Female, age 94, left hemisphere 47.1
2821 Male, age 75, both hemispheres 42.7
2393 Male, age 80, right hemisphere 41.3
Nucleus of the diagonal band
nTPM: 42.4
1812 Female, age 91, both hemispheres 44.6
2195 Female, age 85, both hemispheres 43.1
1979 Male, age 74, unknown 42.6
2775 Male, age 80, right hemisphere 41.1
2029 Male, age 61, right hemisphere 40.6
Olfactory tubercle
nTPM: 43.1
2487 Female, age 94, left hemisphere 44.4
2856 Male, age 75, right hemisphere 43.8
1846 Male, age 80, right hemisphere 42.5
1998 Female, age 91, both hemispheres 41.5
Putamen
nTPM: 46.1
2489 Female, age 72, unknown 53.7
1829 Male, age 74, unknown 48.6
2466 Female, age 79, unknown 47.9
2647 Male, age 75, left hemisphere 46.6
2482 Female, age 94, left hemisphere 43.9
1838 Male, age 80, right hemisphere 41.9
1937 Female, age 91, right hemisphere 40.4
Septal nuclei
nTPM: 43.7
2394 Male, age 61, left hemisphere 46.9
2199 Male, age 80, right hemisphere 45.7
2059 Female, age 85, both hemispheres 44.9
2009 Female, age 91, both hemispheres 42.8
1960 Male, age 74, unknown 42.7
2629 Female, age 94, right hemisphere 41.6
2031 Female, age 72, unknown 41.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.6
Samples: 246

Max nTPM: 73.3
Min nTPM: 14.0
Std nTPM: 10.4
Median nTPM: 36.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 73.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 70.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 69.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 67.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 64.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 63.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 62.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 62.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 62.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 60.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 59.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.9
Samples: 246

Max nTPM: 80.3
Min nTPM: 10.0
Std nTPM: 10.4
Median nTPM: 33.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 80.3
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 74.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 66.0
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 62.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 62.4
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 61.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 60.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 60.3
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 59.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 59.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 58.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 43.8
Samples: 205

Max nTPM: 102.3
Min nTPM: 14.6
Std nTPM: 12.9
Median nTPM: 42.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 102.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 94.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 83.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 78.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 75.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 71.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 70.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 70.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 69.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 68.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 67.5
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.3
FF:10164-103B2 76 years, female 16.3
Globus pallidus
Scaled Tags Per Million: 28.5
FF:10161-103A8 76 years, female 33.4
FF:10175-103C4 60 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 17.8
FF:10037-101F1 23-56 years, mixed 17.8
Putamen
Scaled Tags Per Million: 13.5
FF:10176-103C5 60 years, female 13.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.4
Pig sample Sample description nTPM
Caudate
nTPM: 16.0
Samples: 4

Max nTPM: 19.4
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 15.7
Sample C Male 19.4
Sample D Male 15.0
Putamen
nTPM: 16.4
Samples: 4

Max nTPM: 18.8
Min nTPM: 14.3
Sample A Female 15.2
Sample B Female 14.3
Sample C Male 17.4
Sample D Male 18.8
Septum
nTPM: 14.0
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.2
Sample A Female 15.9
Sample B Female 13.3
Sample C Male 13.7
Sample D Male 13.2
Ventral pallidum
nTPM: 15.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 14.9
Sample C Male 17.1
Sample D Male 16.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.