BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.4 nTPM
HPA:37.4 nTPM
GTEx:26.4 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:1.9 nTPM
Mouse:15.9 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.0
2481 Female, age 94, left hemisphere 38.9
1857 Female, age 85, left hemisphere 38.8
2289 Male, age 61, right hemisphere 38.6
2290 Female, age 72, unknown 38.1
1854 Male, age 80, left hemisphere 37.3
1781 Male, age 74, unknown 36.1
2846 Female, age 79, unknown 34.7
2288 Male, age 75, left hemisphere 33.9
Claustrum
nTPM: 32.5
2198 Male, age 80, both hemispheres 35.1
2645 Female, age 72, unknown 34.0
2196 Female, age 79, unknown 32.8
2284 Female, age 91, both hemispheres 32.5
2392 Female, age 94, both hemispheres 32.3
2491 Male, age 75, both hemispheres 32.3
2292 Female, age 85, both hemispheres 32.2
1956 Male, age 74, unknown 31.5
2568 Male, age 61, both hemispheres 29.7
Globus pallidus, externus
nTPM: 37.4
2395 Male, age 75, both hemispheres 39.5
1996 Male, age 80, right hemisphere 39.4
2772 Female, age 79, unknown 38.1
2646 Male, age 61, right hemisphere 37.1
2567 Female, age 72, unknown 32.8
Globus pallidus, internus
nTPM: 35.6
2483 Female, age 94, right hemisphere 39.1
2037 Male, age 80, right hemisphere 37.0
1818 Male, age 74, unknown 35.8
2287 Male, age 75, right hemisphere 35.6
2111 Female, age 85, right hemisphere 34.5
2566 Female, age 72, unknown 33.7
2778 Female, age 91, both hemispheres 33.3
Nucleus accumbens
nTPM: 35.2
2732 Male, age 80, right hemisphere 40.3
1806 Female, age 85, left hemisphere 38.7
2286 Male, age 75, left hemisphere 35.2
2698 Female, age 72, unknown 35.2
2391 Female, age 94, left hemisphere 34.1
1783 Male, age 74, unknown 33.9
1856 Female, age 91, right hemisphere 33.8
2824 Male, age 61, right hemisphere 30.7
Nucleus basalis of Meynert
nTPM: 36.6
2393 Male, age 80, right hemisphere 38.3
2569 Male, age 61, both hemispheres 37.7
2821 Male, age 75, both hemispheres 35.7
2484 Female, age 94, left hemisphere 34.8
Nucleus of the diagonal band
nTPM: 34.8
1812 Female, age 91, both hemispheres 38.1
1979 Male, age 74, unknown 35.6
2775 Male, age 80, right hemisphere 34.7
2195 Female, age 85, both hemispheres 32.8
2029 Male, age 61, right hemisphere 32.7
Olfactory tubercle
nTPM: 34.1
1846 Male, age 80, right hemisphere 39.1
2856 Male, age 75, right hemisphere 33.2
2487 Female, age 94, left hemisphere 33.0
1998 Female, age 91, both hemispheres 31.3
Putamen
nTPM: 34.9
2482 Female, age 94, left hemisphere 38.2
2489 Female, age 72, unknown 36.9
1838 Male, age 80, right hemisphere 35.8
2466 Female, age 79, unknown 33.7
1829 Male, age 74, unknown 33.6
2647 Male, age 75, left hemisphere 33.4
1937 Female, age 91, right hemisphere 32.6
Septal nuclei
nTPM: 37.0
2199 Male, age 80, right hemisphere 43.6
2394 Male, age 61, left hemisphere 39.4
2059 Female, age 85, both hemispheres 36.8
2629 Female, age 94, right hemisphere 36.0
2009 Female, age 91, both hemispheres 35.8
1960 Male, age 74, unknown 34.6
2031 Female, age 72, unknown 32.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.4
Samples: 246

Max nTPM: 135.4
Min nTPM: 4.9
Std nTPM: 13.8
Median nTPM: 23.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 135.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 73.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 62.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 57.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 55.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 55.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 54.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 53.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 52.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 50.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 49.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.2
Samples: 246

Max nTPM: 107.6
Min nTPM: 6.9
Std nTPM: 14.9
Median nTPM: 21.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 107.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 102.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 92.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 78.5
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 77.3
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 71.5
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 59.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 57.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 55.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 54.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 53.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 26.3
Samples: 205

Max nTPM: 63.1
Min nTPM: 6.1
Std nTPM: 12.8
Median nTPM: 22.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 63.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 60.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 58.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 58.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 56.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 56.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 55.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 55.7
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 54.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 52.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 52.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.4
FF:10164-103B2 76 years, female 24.4
Globus pallidus
Scaled Tags Per Million: 26.7
FF:10161-103A8 76 years, female 37.7
FF:10175-103C4 60 years, female 15.7
Nucleus accumbens
Scaled Tags Per Million: 8.9
FF:10037-101F1 23-56 years, mixed 8.9
Putamen
Scaled Tags Per Million: 16.0
FF:10176-103C5 60 years, female 16.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.9
Pig sample Sample description nTPM
Caudate
nTPM: 1.4
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.0
Sample A Female 1.8
Sample B Female 1.0
Sample C Male 1.3
Sample D Male 1.6
Putamen
nTPM: 1.4
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.9
Sample A Female 2.2
Sample B Female 0.9
Sample C Male 0.9
Sample D Male 1.6
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.9
Sample A Female 2.9
Sample B Female 0.9
Sample C Male 2.3
Sample D Male 1.6
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.0
Sample A Female 1.1
Sample B Female 2.7
Sample C Male 1.0
Sample D Male 2.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 2.8
Sample A Male 3.6
Sample B Male 4.9
Sample C Female 2.8
Sample D Female 5.6
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 3.3
Sample A Male 7.9
Sample B Male 3.5
Sample C Female 5.1
Sample D Female 3.3
Ventral forebrain
nTPM: 15.9
Samples: 4

Max nTPM: 27.2
Min nTPM: 10.0
Sample A Male 10.0
Sample B Male 16.1
Sample C Female 27.2
Sample D Female 10.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68076548 Antisense, RP_040923_02_F09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68076548 Antisense, RP_040923_02_F09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.