HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.6 nTPM
HPA:38.6 nTPM
GTEx:26.9 nTPM
FANTOM5:31.0 Scaled Tags Per Million
Pig:2.2 nTPM
Mouse:9.3 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.6
Sample id Sample description nTPM
Hippocampus
nTPM: 38.6
1855 Male, age 76, left hemisphere 43.3
1898 Male, age 80, left hemisphere 38.9
2529 Female, age 94, left hemisphere 38.7
2148 Female, age 91, left hemisphere 38.0
2621 Female, age 67, right hemisphere 36.9
1911 Female, age 85, right hemisphere 35.9
Dentate gyrus
nTPM: 37.2
2010 Male, age 76, both hemispheres 40.7
2528 Male, age 74, both hemispheres 39.4
2246 Female, age 85, both hemispheres 37.6
2530 Female, age 94, left hemisphere 35.9
1927 Female, age 91, both hemispheres 34.6
2531 Female, age 67, both hemispheres 34.6
Entorhinal gyrus
nTPM: 34.5
2117 Female, age 91, right hemisphere 39.5
1787 Male, age 76, left hemisphere 35.9
1938 Female, age 85, left hemisphere 34.4
2686 Male, age 75, right hemisphere 33.9
2764 Male, age 80, right hemisphere 32.6
2613 Female, age 94, left hemisphere 31.1
Hippocampus, CA1
nTPM: 35.9
2045 Male, age 76, both hemispheres 37.3
2527 Male, age 74, both hemispheres 36.8
2082 Female, age 91, right hemisphere 36.3
2749 Male, age 80, left hemisphere 34.7
1873 Female, age 85, both hemispheres 34.5
Hippocampus, CA2
nTPM: 36.7
2249 Male, age 74, both hemispheres 40.7
1940 Female, age 85, left hemisphere 37.7
2113 Female, age 91, right hemisphere 36.9
2437 Female, age 94, left hemisphere 36.2
1963 Male, age 80, left hemisphere 34.7
1892 Male, age 76, both hemispheres 34.3
Hippocampus, CA3
nTPM: 36.1
2436 Male, age 74, both hemispheres 36.7
1867 Male, age 76, both hemispheres 36.6
2620 Female, age 94, left hemisphere 36.1
2137 Male, age 80, left hemisphere 36.0
1891 Female, age 85, both hemispheres 35.7
2861 Female, age 67, both hemispheres 35.2
Parahippocampal cortex
nTPM: 34.2
2250 Female, age 67, right hemisphere 37.8
2018 Male, age 76, both hemispheres 36.6
2245 Female, age 91, both hemispheres 35.9
2622 Female, age 67, right hemisphere 34.8
1990 Female, age 91, right hemisphere 34.4
1933 Female, age 85, both hemispheres 33.3
2693 Female, age 94, both hemispheres 32.8
2692 Male, age 74, both hemispheres 32.6
1850 Male, age 80, both hemispheres 32.0
2532 Female, age 72, left hemisphere 31.9
Perirhinal gyrus
nTPM: 33.5
2521 Female, age 94, right hemisphere 35.6
1794 Male, age 80, right hemisphere 33.6
1847 Female, age 91, left hemisphere 33.2
2848 Male, age 76, right hemisphere 32.7
1841 Female, age 85, right hemisphere 32.2
Subiculum
nTPM: 36.2
2042 Male, age 76, both hemispheres 40.6
2729 Female, age 91, right hemisphere 38.7
1901 Male, age 80, both hemispheres 35.4
2619 Male, age 74, both hemispheres 34.8
2438 Female, age 94, left hemisphere 34.0
1977 Female, age 85, both hemispheres 33.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.9
Samples: 197

Max nTPM: 143.5
Min nTPM: 7.9
Std nTPM: 18.9
Median nTPM: 22.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 143.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 124.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 112.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 112.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 99.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 84.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 73.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 71.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 67.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 56.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 50.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.0
FF:10153-102I9 76 years, female 32.8
FF:10169-103B7 60 years, female 29.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 2.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1.5
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.0
Sample A Female 2.2
Sample B Female 1.0
Sample C Male 1.7
Sample D Male 1.1
Entorhinal cortex
nTPM: 2.2
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.0
Sample A Female 3.3
Sample B Female 2.9
Sample C Male 1.7
Sample D Male 1.0
Subiculum
nTPM: 2.2
Samples: 4

Max nTPM: 4.4
Min nTPM: 0.6
Sample A Female 2.0
Sample B Female 0.6
Sample C Male 1.7
Sample D Male 4.4
Ventral hippocampus
nTPM: 2.0
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.0
Sample A Female 2.2
Sample B Female 1.0
Sample C Male 3.8
Sample D Male 1.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.3
Samples: 4

Max nTPM: 12.5
Min nTPM: 6.7
Sample A Male 6.7
Sample B Male 7.7
Sample C Female 10.3
Sample D Female 12.5
Hippocampal formation
nTPM: 5.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 3.5
Sample A Male 4.9
Sample B Male 3.5
Sample C Female 4.5
Sample D Female 7.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
68076548 Antisense, RP_040923_02_F09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.