MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.7 nTPM
HPA:12.7 nTPM
GTEx:10.4 nTPM
FANTOM5:12.8 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:2.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.0
2219 Male, age 76, both hemispheres 13.5
2586 Male, age 75, left hemisphere 13.2
2828 Female, age 72, unknown 12.6
2666 Male, age 74, left hemisphere 12.3
1833 Male, age 53, unknown 12.2
1830 Male, age 51, unknown 12.0
2411 Female, age 72, unknown 11.5
1870 Female, age 42, unknown 11.4
2019 Male, age 18, unknown 10.8
1827 Male, age 72, unknown 10.7
Dorsal raphe nucleus
nTPM: 11.7
2047 Male, age 72, unknown 12.5
2016 Female, age 72, unknown 11.8
1828 Male, age 53, unknown 11.7
2298 Female, age 72, unknown 11.4
2750 Male, age 76, both hemispheres 11.1
Inferior colliculus
nTPM: 11.7
1848 Female, age 42, unknown 12.0
2849 Male, age 72, unknown 11.8
2097 Female, age 72, unknown 11.6
1890 Male, age 53, unknown 11.4
Median raphe nucleus
nTPM: 10.8
2220 Male, age 76, midline 10.8
Pedunculopontine tegmental nucleus
nTPM: 11.3
2338 Male, age 61, both hemispheres 12.0
1921 Female, age 85, both hemispheres 11.3
2334 Male, age 80, both hemispheres 10.6
Periaquaductal grey, anterior
nTPM: 11.1
2502 Female, age 75, unknown 11.2
1795 Male, age 51, unknown 11.1
1947 Male, age 18, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 11.7
1831 Male, age 72, unknown 12.4
2464 Female, age 72, unknown 12.2
1840 Male, age 53, unknown 11.2
2850 Male, age 76, both hemispheres 11.1
Periaquaductal grey, lateral
nTPM: 11.3
2053 Male, age 18, unknown 12.2
2140 Male, age 76, both hemispheres 11.4
2272 Male, age 74, both hemispheres 10.2
Pretectal area
nTPM: 11.2
2407 Male, age 75, both hemispheres 12.0
1817 Female, age 42, unknown 11.9
2825 Male, age 18, unknown 11.8
2316 Male, age 76, right hemisphere 11.6
1944 Female, age 72, unknown 11.3
1815 Male, age 53, unknown 11.2
2667 Female, age 75, unknown 11.1
1816 Male, age 51, unknown 11.0
2007 Male, age 72, unknown 10.7
2224 Female, age 72, unknown 10.5
2273 Male, age 74, both hemispheres 10.1
Red nucleus
nTPM: 12.3
2503 Female, age 72, unknown 13.1
2588 Male, age 74, left hemisphere 13.1
2823 Male, age 76, right hemisphere 12.8
1954 Female, age 42, unknown 12.7
1821 Female, age 72, unknown 12.3
2769 Male, age 72, unknown 12.3
1865 Male, age 51, unknown 12.2
2227 Male, age 72, unknown 12.2
2725 Female, age 75, unknown 12.2
1904 Male, age 53, unknown 11.7
2584 Male, age 75, left hemisphere 11.7
2785 Male, age 18, unknown 11.2
Substantia nigra
nTPM: 12.7
1941 Male, age 53, unknown 13.8
2699 Male, age 18, unknown 13.8
2665 Male, age 74, both hemispheres 13.1
2409 Female, age 72, unknown 13.0
2583 Male, age 75, right hemisphere 13.0
2590 Female, age 75, unknown 12.6
2241 Male, age 72, unknown 12.3
1851 Male, age 51, unknown 12.1
1889 Female, age 72, unknown 11.5
1916 Female, age 42, unknown 11.4
Superior colliculus
nTPM: 11.5
1995 Male, age 72, unknown 12.1
2664 Male, age 75, both hemispheres 11.9
1839 Male, age 51, unknown 11.8
2087 Female, age 72, unknown 11.8
2668 Female, age 75, unknown 11.5
1913 Female, age 42, unknown 11.4
2261 Male, age 18, unknown 11.3
2587 Male, age 74, left hemisphere 11.3
1895 Male, age 76, right hemisphere 11.0
1796 Male, age 53, unknown 10.9
Ventral tegmental area
nTPM: 12.3
2021 Male, age 53, unknown 13.0
1915 Female, age 42, unknown 12.7
1942 Male, age 51, unknown 12.6
2410 Female, age 72, unknown 12.6
2218 Male, age 76, both hemispheres 11.3
2223 Female, age 72, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.4
Samples: 139

Max nTPM: 24.1
Min nTPM: 5.9
Std nTPM: 2.9
Median nTPM: 10.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 24.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 16.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 15.9
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 15.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 15.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 15.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 14.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 14.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 14.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.8
FF:10158-103A5 76 years, female 12.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.8
Pig sample Sample description nTPM
Midbrain
nTPM: 2.3
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.5
Sample A Female 2.8
Sample B Female 1.9
Sample C Male 2.9
Sample D Male 1.5
Periaqueductal gray
nTPM: 2.1
Samples: 3

Max nTPM: 2.3
Min nTPM: 1.9
Sample B Female 2.1
Sample C Male 2.3
Sample D Male 1.9
Substantia nigra
nTPM: 2.8
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.3
Sample A Female 3.0
Sample B Female 3.4
Sample C Male 2.6
Sample D Male 2.3
Superior colliculi
nTPM: 2.5
Samples: 4

Max nTPM: 4.4
Min nTPM: 1.7
Sample A Female 2.2
Sample B Female 4.4
Sample C Male 1.8
Sample D Male 1.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.5
Sample A Male 2.7
Sample B Male 2.8
Sample C Female 2.5
Sample D Female 2.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71789831 Antisense, RP_050921_03_G01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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