MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA:16.0 nTPM
GTEx:23.2 nTPM
FANTOM5:82.5 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:9.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.5
1830 Male, age 51, unknown 11.4
2666 Male, age 74, left hemisphere 11.0
2828 Female, age 72, unknown 10.6
2019 Male, age 18, unknown 10.3
1833 Male, age 53, unknown 10.1
1870 Female, age 42, unknown 9.7
1827 Male, age 72, unknown 9.6
2411 Female, age 72, unknown 8.5
2219 Male, age 76, both hemispheres 6.9
2586 Male, age 75, left hemisphere 6.9
Dorsal raphe nucleus
nTPM: 10.8
2016 Female, age 72, unknown 12.8
2298 Female, age 72, unknown 11.4
2750 Male, age 76, both hemispheres 10.7
1828 Male, age 53, unknown 10.6
2047 Male, age 72, unknown 8.5
Inferior colliculus
nTPM: 9.4
2097 Female, age 72, unknown 10.4
2849 Male, age 72, unknown 9.3
1890 Male, age 53, unknown 9.1
1848 Female, age 42, unknown 8.8
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Pedunculopontine tegmental nucleus
nTPM: 16.0
2338 Male, age 61, both hemispheres 28.4
2334 Male, age 80, both hemispheres 11.6
1921 Female, age 85, both hemispheres 8.0
Periaquaductal grey, anterior
nTPM: 9.0
1795 Male, age 51, unknown 9.8
1947 Male, age 18, unknown 9.0
2502 Female, age 75, unknown 8.2
Periaquaductal grey, dorsal
nTPM: 10.5
1831 Male, age 72, unknown 13.4
2850 Male, age 76, both hemispheres 10.9
1840 Male, age 53, unknown 9.3
2464 Female, age 72, unknown 8.5
Periaquaductal grey, lateral
nTPM: 11.5
2272 Male, age 74, both hemispheres 12.3
2140 Male, age 76, both hemispheres 11.2
2053 Male, age 18, unknown 11.0
Pretectal area
nTPM: 10.1
2407 Male, age 75, both hemispheres 14.1
2316 Male, age 76, right hemisphere 11.9
2273 Male, age 74, both hemispheres 11.2
1815 Male, age 53, unknown 10.6
1817 Female, age 42, unknown 10.2
1944 Female, age 72, unknown 9.5
2007 Male, age 72, unknown 9.4
2224 Female, age 72, unknown 9.1
2825 Male, age 18, unknown 9.1
2667 Female, age 75, unknown 8.6
1816 Male, age 51, unknown 7.8
Red nucleus
nTPM: 10.3
1865 Male, age 51, unknown 12.2
2503 Female, age 72, unknown 11.6
2725 Female, age 75, unknown 11.2
1904 Male, age 53, unknown 11.0
2823 Male, age 76, right hemisphere 10.7
2584 Male, age 75, left hemisphere 10.2
2785 Male, age 18, unknown 10.2
2227 Male, age 72, unknown 10.1
2769 Male, age 72, unknown 10.1
1954 Female, age 42, unknown 9.6
1821 Female, age 72, unknown 9.4
2588 Male, age 74, left hemisphere 7.0
Substantia nigra
nTPM: 14.2
2590 Female, age 75, unknown 20.2
2409 Female, age 72, unknown 16.9
2665 Male, age 74, both hemispheres 16.4
2699 Male, age 18, unknown 16.3
1916 Female, age 42, unknown 13.6
2583 Male, age 75, right hemisphere 13.2
2241 Male, age 72, unknown 12.4
1851 Male, age 51, unknown 12.3
1941 Male, age 53, unknown 11.5
1889 Female, age 72, unknown 8.9
Superior colliculus
nTPM: 10.6
1913 Female, age 42, unknown 13.9
2587 Male, age 74, left hemisphere 13.4
1995 Male, age 72, unknown 11.8
1839 Male, age 51, unknown 10.1
2664 Male, age 75, both hemispheres 10.1
1796 Male, age 53, unknown 9.9
2087 Female, age 72, unknown 9.6
1895 Male, age 76, right hemisphere 9.1
2261 Male, age 18, unknown 9.1
2668 Female, age 75, unknown 8.9
Ventral tegmental area
nTPM: 12.1
2021 Male, age 53, unknown 13.8
1915 Female, age 42, unknown 12.7
2218 Male, age 76, both hemispheres 12.2
2410 Female, age 72, unknown 12.2
1942 Male, age 51, unknown 11.1
2223 Female, age 72, unknown 10.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.2
Samples: 139

Max nTPM: 111.2
Min nTPM: 2.2
Std nTPM: 20.2
Median nTPM: 17.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 111.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 97.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 97.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 83.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 81.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 66.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 62.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 62.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 59.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 59.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 56.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.5
FF:10158-103A5 76 years, female 82.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 41.6
Min nTPM: 8.4
Sample A Female 41.6
Sample B Female 32.5
Sample C Male 8.4
Sample D Male 13.2
Periaqueductal gray
nTPM: 29.0
Samples: 3

Max nTPM: 32.0
Min nTPM: 24.8
Sample B Female 30.2
Sample C Male 32.0
Sample D Male 24.8
Substantia nigra
nTPM: 29.2
Samples: 4

Max nTPM: 34.5
Min nTPM: 23.8
Sample A Female 32.8
Sample B Female 34.5
Sample C Male 23.8
Sample D Male 25.8
Superior colliculi
nTPM: 18.2
Samples: 4

Max nTPM: 22.4
Min nTPM: 15.7
Sample A Female 22.4
Sample B Female 15.8
Sample C Male 15.7
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 10.3
Min nTPM: 8.9
Sample A Male 10.3
Sample B Male 8.9
Sample C Female 9.2
Sample D Female 10.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68445203 Antisense, RP_050113_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.