BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA:16.6 nTPM
GTEx:20.5 nTPM
FANTOM5:27.6 Scaled Tags Per Million
Pig:73.4 nTPM
Mouse:100.2 nTPM
Allen mouse:8.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody CAB002615
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.4
2289 Male, age 61, right hemisphere 18.1
2846 Female, age 79, unknown 17.9
2290 Female, age 72, unknown 17.5
1854 Male, age 80, left hemisphere 14.9
1857 Female, age 85, left hemisphere 14.8
2481 Female, age 94, left hemisphere 14.4
2288 Male, age 75, left hemisphere 13.5
1781 Male, age 74, unknown 12.3
Claustrum
nTPM: 10.8
2196 Female, age 79, unknown 12.8
2568 Male, age 61, both hemispheres 11.9
2284 Female, age 91, both hemispheres 11.7
2198 Male, age 80, both hemispheres 10.6
2392 Female, age 94, both hemispheres 10.6
2491 Male, age 75, both hemispheres 10.5
2645 Female, age 72, unknown 10.1
1956 Male, age 74, unknown 9.8
2292 Female, age 85, both hemispheres 9.3
Globus pallidus, externus
nTPM: 12.4
2646 Male, age 61, right hemisphere 16.2
1996 Male, age 80, right hemisphere 11.7
2772 Female, age 79, unknown 11.7
2395 Male, age 75, both hemispheres 11.6
2567 Female, age 72, unknown 11.1
Globus pallidus, internus
nTPM: 12.0
2483 Female, age 94, right hemisphere 13.1
2566 Female, age 72, unknown 12.6
2287 Male, age 75, right hemisphere 12.4
2778 Female, age 91, both hemispheres 12.0
2037 Male, age 80, right hemisphere 11.6
1818 Male, age 74, unknown 11.3
2111 Female, age 85, right hemisphere 11.1
Nucleus accumbens
nTPM: 16.0
1856 Female, age 91, right hemisphere 18.7
2824 Male, age 61, right hemisphere 17.6
2698 Female, age 72, unknown 16.6
2732 Male, age 80, right hemisphere 16.6
1806 Female, age 85, left hemisphere 15.5
1783 Male, age 74, unknown 15.0
2286 Male, age 75, left hemisphere 14.3
2391 Female, age 94, left hemisphere 13.5
Nucleus basalis of Meynert
nTPM: 15.3
2393 Male, age 80, right hemisphere 18.6
2569 Male, age 61, both hemispheres 17.3
2484 Female, age 94, left hemisphere 12.7
2821 Male, age 75, both hemispheres 12.5
Nucleus of the diagonal band
nTPM: 13.6
1979 Male, age 74, unknown 15.7
2195 Female, age 85, both hemispheres 14.0
1812 Female, age 91, both hemispheres 13.9
2775 Male, age 80, right hemisphere 12.7
2029 Male, age 61, right hemisphere 11.4
Olfactory tubercle
nTPM: 12.1
1846 Male, age 80, right hemisphere 13.4
1998 Female, age 91, both hemispheres 11.8
2856 Male, age 75, right hemisphere 11.8
2487 Female, age 94, left hemisphere 11.4
Putamen
nTPM: 16.6
2489 Female, age 72, unknown 19.0
1838 Male, age 80, right hemisphere 18.4
1829 Male, age 74, unknown 18.1
1937 Female, age 91, right hemisphere 17.0
2466 Female, age 79, unknown 17.0
2647 Male, age 75, left hemisphere 13.5
2482 Female, age 94, left hemisphere 13.2
Septal nuclei
nTPM: 13.5
2059 Female, age 85, both hemispheres 15.4
2394 Male, age 61, left hemisphere 14.2
2199 Male, age 80, right hemisphere 13.7
2009 Female, age 91, both hemispheres 13.5
1960 Male, age 74, unknown 13.2
2629 Female, age 94, right hemisphere 12.5
2031 Female, age 72, unknown 11.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.5
Samples: 246

Max nTPM: 73.9
Min nTPM: 4.2
Std nTPM: 10.4
Median nTPM: 17.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 73.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 57.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 51.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 49.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 46.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 44.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 43.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 42.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 41.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 41.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 41.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.3
Samples: 246

Max nTPM: 54.4
Min nTPM: 2.9
Std nTPM: 9.1
Median nTPM: 15.5
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 54.4
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 52.0
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 45.4
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 44.3
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 43.0
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 42.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 42.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 38.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 38.7
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 38.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 37.7
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Brain - Putamen (basal ganglia)
Average nTPM: 20.5
Samples: 205

Max nTPM: 68.4
Min nTPM: 4.5
Std nTPM: 11.9
Median nTPM: 18.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 68.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 65.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 60.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 53.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 53.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 47.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 46.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 46.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 46.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 45.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 44.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.8
FF:10164-103B2 76 years, female 16.8
Globus pallidus
Scaled Tags Per Million: 13.8
FF:10175-103C4 60 years, female 18.9
FF:10161-103A8 76 years, female 8.6
Nucleus accumbens
Scaled Tags Per Million: 23.8
FF:10037-101F1 23-56 years, mixed 23.8
Putamen
Scaled Tags Per Million: 27.6
FF:10176-103C5 60 years, female 27.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 73.4
Pig sample Sample description nTPM
Caudate
nTPM: 73.4
Samples: 4

Max nTPM: 94.8
Min nTPM: 41.8
Sample A Female 41.8
Sample B Female 75.8
Sample C Male 94.8
Sample D Male 81.3
Putamen
nTPM: 72.6
Samples: 4

Max nTPM: 104.2
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 76.3
Sample C Male 104.2
Sample D Male 88.0
Septum
nTPM: 24.3
Samples: 4

Max nTPM: 40.2
Min nTPM: 10.6
Sample A Female 40.2
Sample B Female 34.3
Sample C Male 10.6
Sample D Male 12.0
Ventral pallidum
nTPM: 34.2
Samples: 4

Max nTPM: 51.5
Min nTPM: 10.7
Sample A Female 51.5
Sample B Female 27.1
Sample C Male 10.7
Sample D Male 47.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 100.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 100.2
Samples: 4

Max nTPM: 121.6
Min nTPM: 83.7
Sample A Male 105.6
Sample B Male 121.6
Sample C Female 89.8
Sample D Female 83.7
Septum
nTPM: 12.9
Samples: 4

Max nTPM: 20.7
Min nTPM: 8.8
Sample A Male 20.7
Sample B Male 8.8
Sample C Female 9.3
Sample D Female 12.8
Ventral forebrain
nTPM: 36.9
Samples: 4

Max nTPM: 42.9
Min nTPM: 32.2
Sample A Male 32.2
Sample B Male 34.1
Sample C Female 42.9
Sample D Female 38.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.2
918 Antisense, RP_Baylor_103013, Mouse strain C57BL/6J (56 days, male) 8.2
917 Antisense, RP_Baylor_103013, Mouse strain C57BL/6J (56 days, male) 6.1
Pallidum
Expression energy: 5.0
918 Antisense, RP_Baylor_103013, Mouse strain C57BL/6J (56 days, male) 5.0
917 Antisense, RP_Baylor_103013, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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