MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA:15.7 nTPM
GTEx:9.6 nTPM
FANTOM5:28.0 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:15.8 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.6
2666 Male, age 74, left hemisphere 14.6
2019 Male, age 18, unknown 14.3
2586 Male, age 75, left hemisphere 13.9
1827 Male, age 72, unknown 13.7
1830 Male, age 51, unknown 13.7
1870 Female, age 42, unknown 13.7
2411 Female, age 72, unknown 13.7
2828 Female, age 72, unknown 13.7
1833 Male, age 53, unknown 13.2
2219 Male, age 76, both hemispheres 11.7
Dorsal raphe nucleus
nTPM: 12.9
2016 Female, age 72, unknown 13.6
2298 Female, age 72, unknown 13.5
2047 Male, age 72, unknown 13.0
1828 Male, age 53, unknown 12.4
2750 Male, age 76, both hemispheres 12.1
Inferior colliculus
nTPM: 13.1
2849 Male, age 72, unknown 13.3
2097 Female, age 72, unknown 13.2
1890 Male, age 53, unknown 13.1
1848 Female, age 42, unknown 12.7
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Pedunculopontine tegmental nucleus
nTPM: 12.9
2338 Male, age 61, both hemispheres 15.6
1921 Female, age 85, both hemispheres 11.8
2334 Male, age 80, both hemispheres 11.5
Periaquaductal grey, anterior
nTPM: 12.6
1795 Male, age 51, unknown 14.2
1947 Male, age 18, unknown 12.7
2502 Female, age 75, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 15.7
2850 Male, age 76, both hemispheres 19.9
2464 Female, age 72, unknown 15.0
1840 Male, age 53, unknown 14.5
1831 Male, age 72, unknown 13.3
Periaquaductal grey, lateral
nTPM: 15.6
2140 Male, age 76, both hemispheres 18.8
2272 Male, age 74, both hemispheres 14.3
2053 Male, age 18, unknown 13.7
Pretectal area
nTPM: 14.0
2407 Male, age 75, both hemispheres 16.1
2316 Male, age 76, right hemisphere 15.0
2667 Female, age 75, unknown 14.7
1944 Female, age 72, unknown 14.1
2273 Male, age 74, both hemispheres 14.1
1816 Male, age 51, unknown 13.9
1817 Female, age 42, unknown 13.6
2224 Female, age 72, unknown 13.3
2825 Male, age 18, unknown 13.3
1815 Male, age 53, unknown 13.2
2007 Male, age 72, unknown 13.0
Red nucleus
nTPM: 14.1
2584 Male, age 75, left hemisphere 16.9
1904 Male, age 53, unknown 15.9
2823 Male, age 76, right hemisphere 15.6
2769 Male, age 72, unknown 14.7
2725 Female, age 75, unknown 14.2
2503 Female, age 72, unknown 13.7
2588 Male, age 74, left hemisphere 13.5
1865 Male, age 51, unknown 13.4
2785 Male, age 18, unknown 13.4
1954 Female, age 42, unknown 13.0
2227 Male, age 72, unknown 12.9
1821 Female, age 72, unknown 12.3
Substantia nigra
nTPM: 13.2
2241 Male, age 72, unknown 16.8
2590 Female, age 75, unknown 14.6
2699 Male, age 18, unknown 14.1
2583 Male, age 75, right hemisphere 13.8
1851 Male, age 51, unknown 12.7
2665 Male, age 74, both hemispheres 12.7
1941 Male, age 53, unknown 12.2
2409 Female, age 72, unknown 12.2
1889 Female, age 72, unknown 11.8
1916 Female, age 42, unknown 11.3
Superior colliculus
nTPM: 14.3
2664 Male, age 75, both hemispheres 15.5
2261 Male, age 18, unknown 15.4
1913 Female, age 42, unknown 15.3
2087 Female, age 72, unknown 14.8
1796 Male, age 53, unknown 14.6
1995 Male, age 72, unknown 14.0
2668 Female, age 75, unknown 13.9
1839 Male, age 51, unknown 13.6
1895 Male, age 76, right hemisphere 12.7
2587 Male, age 74, left hemisphere 12.7
Ventral tegmental area
nTPM: 13.4
2021 Male, age 53, unknown 15.0
2223 Female, age 72, unknown 14.6
1942 Male, age 51, unknown 13.4
2218 Male, age 76, both hemispheres 13.0
1915 Female, age 42, unknown 12.4
2410 Female, age 72, unknown 12.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.6
Samples: 139

Max nTPM: 14.8
Min nTPM: 5.7
Std nTPM: 1.7
Median nTPM: 9.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 14.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 14.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 13.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 13.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 13.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 12.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 12.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 12.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 12.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 12.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.0
FF:10158-103A5 76 years, female 28.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.8
Pig sample Sample description nTPM
Midbrain
nTPM: 19.4
Samples: 4

Max nTPM: 19.9
Min nTPM: 18.7
Sample A Female 18.7
Sample B Female 19.1
Sample C Male 19.8
Sample D Male 19.9
Periaqueductal gray
nTPM: 19.9
Samples: 3

Max nTPM: 20.2
Min nTPM: 19.4
Sample B Female 20.0
Sample C Male 20.2
Sample D Male 19.4
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 21.4
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 21.4
Sample C Male 19.9
Sample D Male 20.6
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 26.0
Min nTPM: 18.4
Sample A Female 18.9
Sample B Female 26.0
Sample C Male 18.4
Sample D Male 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 16.8
Min nTPM: 15.3
Sample A Male 16.8
Sample B Male 15.3
Sample C Female 15.5
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
69079998 Antisense, RP_050324_01_B10, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.