BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.8 nTPM
HPA:37.8 nTPM
GTEx:41.1 nTPM
FANTOM5:118.5 Scaled Tags Per Million
Pig:2.1 nTPM
Mouse:95.4 nTPM
Allen mouse:16.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA063133Antibody HPA067561Antibody CAB021114
Glial cells MediumNot detectedNot detected
Neuronal cells HighLowLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.8
2481 Female, age 94, left hemisphere 45.0
1857 Female, age 85, left hemisphere 40.1
2290 Female, age 72, unknown 39.0
2846 Female, age 79, unknown 37.0
2288 Male, age 75, left hemisphere 36.8
2289 Male, age 61, right hemisphere 36.3
1854 Male, age 80, left hemisphere 35.0
1781 Male, age 74, unknown 33.4
Claustrum
nTPM: 29.6
2196 Female, age 79, unknown 31.2
2392 Female, age 94, both hemispheres 31.0
2292 Female, age 85, both hemispheres 30.7
2491 Male, age 75, both hemispheres 30.2
2284 Female, age 91, both hemispheres 29.8
2198 Male, age 80, both hemispheres 29.6
1956 Male, age 74, unknown 29.0
2645 Female, age 72, unknown 28.8
2568 Male, age 61, both hemispheres 25.9
Globus pallidus, externus
nTPM: 35.2
2646 Male, age 61, right hemisphere 38.5
1996 Male, age 80, right hemisphere 36.7
2567 Female, age 72, unknown 35.6
2395 Male, age 75, both hemispheres 34.2
2772 Female, age 79, unknown 30.9
Globus pallidus, internus
nTPM: 33.9
2483 Female, age 94, right hemisphere 44.0
2287 Male, age 75, right hemisphere 33.6
2566 Female, age 72, unknown 33.6
2037 Male, age 80, right hemisphere 33.3
1818 Male, age 74, unknown 32.2
2778 Female, age 91, both hemispheres 31.0
2111 Female, age 85, right hemisphere 29.5
Nucleus accumbens
nTPM: 35.3
1806 Female, age 85, left hemisphere 40.3
2391 Female, age 94, left hemisphere 36.7
1783 Male, age 74, unknown 35.7
2824 Male, age 61, right hemisphere 35.6
1856 Female, age 91, right hemisphere 34.4
2286 Male, age 75, left hemisphere 34.3
2698 Female, age 72, unknown 34.1
2732 Male, age 80, right hemisphere 30.9
Nucleus basalis of Meynert
nTPM: 35.7
2569 Male, age 61, both hemispheres 40.6
2393 Male, age 80, right hemisphere 35.6
2484 Female, age 94, left hemisphere 35.6
2821 Male, age 75, both hemispheres 31.0
Nucleus of the diagonal band
nTPM: 32.5
1812 Female, age 91, both hemispheres 36.3
1979 Male, age 74, unknown 34.8
2195 Female, age 85, both hemispheres 33.5
2775 Male, age 80, right hemisphere 32.3
2029 Male, age 61, right hemisphere 25.7
Olfactory tubercle
nTPM: 29.8
2856 Male, age 75, right hemisphere 32.2
1846 Male, age 80, right hemisphere 32.1
1998 Female, age 91, both hemispheres 27.5
2487 Female, age 94, left hemisphere 27.5
Putamen
nTPM: 34.0
2489 Female, age 72, unknown 36.5
2482 Female, age 94, left hemisphere 36.4
1829 Male, age 74, unknown 36.2
1838 Male, age 80, right hemisphere 35.1
1937 Female, age 91, right hemisphere 33.4
2466 Female, age 79, unknown 31.9
2647 Male, age 75, left hemisphere 28.3
Septal nuclei
nTPM: 31.7
2199 Male, age 80, right hemisphere 36.8
2394 Male, age 61, left hemisphere 33.7
1960 Male, age 74, unknown 31.6
2059 Female, age 85, both hemispheres 31.1
2009 Female, age 91, both hemispheres 30.6
2629 Female, age 94, right hemisphere 29.5
2031 Female, age 72, unknown 28.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.7
Samples: 246

Max nTPM: 74.4
Min nTPM: 18.9
Std nTPM: 8.7
Median nTPM: 37.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 74.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 67.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 65.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 60.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 60.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 59.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 59.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 59.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 57.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 55.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.1
Samples: 246

Max nTPM: 112.2
Min nTPM: 21.6
Std nTPM: 11.2
Median nTPM: 38.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 112.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 85.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 80.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 70.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 68.8
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 66.5
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 64.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 63.4
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 63.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 62.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 61.9
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Brain - Putamen (basal ganglia)
Average nTPM: 37.4
Samples: 205

Max nTPM: 73.6
Min nTPM: 18.3
Std nTPM: 9.2
Median nTPM: 35.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 73.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 67.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 62.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 61.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 59.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 59.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 58.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 57.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 56.5
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 55.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 55.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 83.5
FF:10164-103B2 76 years, female 83.5
Globus pallidus
Scaled Tags Per Million: 77.9
FF:10161-103A8 76 years, female 87.2
FF:10175-103C4 60 years, female 68.6
Nucleus accumbens
Scaled Tags Per Million: 74.6
FF:10037-101F1 23-56 years, mixed 74.6
Putamen
Scaled Tags Per Million: 118.5
FF:10176-103C5 60 years, female 118.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.1
Pig sample Sample description nTPM
Caudate
nTPM: 1.6
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.0
Sample A Female 1.6
Sample B Female 1.7
Sample C Male 1.0
Sample D Male 2.0
Putamen
nTPM: 0.9
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.4
Sample A Female 1.4
Sample B Female 1.0
Sample C Male 0.4
Sample D Male 0.8
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.7
Sample C Male 1.6
Sample D Male 3.8
Ventral pallidum
nTPM: 1.6
Samples: 4

Max nTPM: 2.1
Min nTPM: 0.7
Sample A Female 1.8
Sample B Female 0.7
Sample C Male 2.1
Sample D Male 1.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 95.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 79.1
Samples: 4

Max nTPM: 85.3
Min nTPM: 76.2
Sample A Male 85.3
Sample B Male 76.6
Sample C Female 76.2
Sample D Female 78.4
Septum
nTPM: 95.4
Samples: 4

Max nTPM: 105.1
Min nTPM: 83.7
Sample A Male 83.7
Sample B Male 105.1
Sample C Female 96.2
Sample D Female 96.7
Ventral forebrain
nTPM: 69.2
Samples: 4

Max nTPM: 72.8
Min nTPM: 65.7
Sample A Male 65.7
Sample B Male 72.8
Sample C Female 71.1
Sample D Female 67.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 16.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 16.1
71610840 Antisense, RP_050927_01_H10, Mouse strain C57BL/6J (56 days, male) 16.1
Pallidum
Expression energy: 14.4
71610840 Antisense, RP_050927_01_H10, Mouse strain C57BL/6J (56 days, male) 14.4

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