MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:122.2 nTPM
HPA:122.2 nTPM
GTEx:95.8 nTPM
FANTOM5:95.7 Scaled Tags Per Million
Mouse:33.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.6
2586 Male, age 75, left hemisphere 137.1
1827 Male, age 72, unknown 124.0
2666 Male, age 74, left hemisphere 123.4
2019 Male, age 18, unknown 122.6
2411 Female, age 72, unknown 121.8
2828 Female, age 72, unknown 120.1
1870 Female, age 42, unknown 119.8
1833 Male, age 53, unknown 116.9
1830 Male, age 51, unknown 116.6
2219 Male, age 76, both hemispheres 114.1
Dorsal raphe nucleus
nTPM: 120.9
2298 Female, age 72, unknown 125.3
2047 Male, age 72, unknown 120.4
1828 Male, age 53, unknown 120.3
2016 Female, age 72, unknown 119.3
2750 Male, age 76, both hemispheres 119.0
Inferior colliculus
nTPM: 119.6
2097 Female, age 72, unknown 123.1
1890 Male, age 53, unknown 121.8
1848 Female, age 42, unknown 117.9
2849 Male, age 72, unknown 115.4
Median raphe nucleus
nTPM: 114.0
2220 Male, age 76, midline 114.0
Pedunculopontine tegmental nucleus
nTPM: 116.5
1921 Female, age 85, both hemispheres 118.7
2334 Male, age 80, both hemispheres 117.7
2338 Male, age 61, both hemispheres 113.2
Periaquaductal grey, anterior
nTPM: 122.2
1947 Male, age 18, unknown 123.0
2502 Female, age 75, unknown 121.9
1795 Male, age 51, unknown 121.7
Periaquaductal grey, dorsal
nTPM: 118.3
1840 Male, age 53, unknown 121.5
2464 Female, age 72, unknown 118.9
1831 Male, age 72, unknown 118.3
2850 Male, age 76, both hemispheres 114.7
Periaquaductal grey, lateral
nTPM: 115.3
2053 Male, age 18, unknown 119.4
2140 Male, age 76, both hemispheres 114.7
2272 Male, age 74, both hemispheres 111.9
Pretectal area
nTPM: 121.9
1816 Male, age 51, unknown 129.3
2007 Male, age 72, unknown 127.9
1817 Female, age 42, unknown 125.0
1815 Male, age 53, unknown 124.6
1944 Female, age 72, unknown 122.8
2407 Male, age 75, both hemispheres 120.5
2667 Female, age 75, unknown 119.8
2316 Male, age 76, right hemisphere 118.7
2825 Male, age 18, unknown 118.0
2224 Female, age 72, unknown 117.1
2273 Male, age 74, both hemispheres 116.8
Red nucleus
nTPM: 120.7
2584 Male, age 75, left hemisphere 124.6
1821 Female, age 72, unknown 123.8
2785 Male, age 18, unknown 122.6
2769 Male, age 72, unknown 121.7
1904 Male, age 53, unknown 120.7
2503 Female, age 72, unknown 120.7
1954 Female, age 42, unknown 120.1
2227 Male, age 72, unknown 120.1
1865 Male, age 51, unknown 120.0
2588 Male, age 74, left hemisphere 119.3
2725 Female, age 75, unknown 118.2
2823 Male, age 76, right hemisphere 116.8
Substantia nigra
nTPM: 120.1
2583 Male, age 75, right hemisphere 126.8
2665 Male, age 74, both hemispheres 123.3
1851 Male, age 51, unknown 123.2
1889 Female, age 72, unknown 120.3
1916 Female, age 42, unknown 120.1
2590 Female, age 75, unknown 119.1
2409 Female, age 72, unknown 118.5
1941 Male, age 53, unknown 117.5
2241 Male, age 72, unknown 117.3
2699 Male, age 18, unknown 114.5
Superior colliculus
nTPM: 122.2
2668 Female, age 75, unknown 128.4
2664 Male, age 75, both hemispheres 127.7
2261 Male, age 18, unknown 122.9
1796 Male, age 53, unknown 122.3
1913 Female, age 42, unknown 120.9
1995 Male, age 72, unknown 120.8
2087 Female, age 72, unknown 120.4
1895 Male, age 76, right hemisphere 119.9
1839 Male, age 51, unknown 119.8
2587 Male, age 74, left hemisphere 119.4
Ventral tegmental area
nTPM: 118.5
2410 Female, age 72, unknown 123.5
1915 Female, age 42, unknown 122.9
2021 Male, age 53, unknown 117.1
1942 Male, age 51, unknown 116.9
2223 Female, age 72, unknown 115.8
2218 Male, age 76, both hemispheres 114.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.8
Samples: 139

Max nTPM: 163.7
Min nTPM: 58.1
Std nTPM: 20.8
Median nTPM: 92.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 163.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 162.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 154.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 148.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 146.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 142.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 139.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 138.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 133.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 132.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 131.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.7
FF:10158-103A5 76 years, female 95.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 35.4
Min nTPM: 32.0
Sample A Male 32.1
Sample B Male 35.4
Sample C Female 32.0
Sample D Female 35.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69134661 Antisense, RP_050321_03_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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