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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:233.5 nTPM
HPA:233.5 nTPM
GTEx:139.5 nTPM
FANTOM5:182.3 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:32.3 nTPM
Allen mouse:2.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 233.5
Sample id Sample description nTPM
Amygdala
nTPM: 233.5
2814 Male, age 76, right hemisphere 256.3
1987 Female, age 91, left hemisphere 232.4
2695 Female, age 67, right hemisphere 227.9
2514 Male, age 75, right hemisphere 225.5
2517 Female, age 94, left hemisphere 225.2
Basal amygdala
nTPM: 220.6
2609 Male, age 75, right hemisphere 255.3
2243 Female, age 91, right hemisphere 235.6
1955 Male, age 76, both hemispheres 230.2
2110 Male, age 80, left hemisphere 209.6
2685 Female, age 94, left hemisphere 203.4
2827 Female, age 67, right hemisphere 189.3
Central amygdala
nTPM: 232.5
1905 Male, age 76, both hemispheres 260.0
2515 Male, age 75, right hemisphere 235.2
2701 Female, age 91, right hemisphere 228.7
2826 Female, age 94, left hemisphere 223.7
2239 Male, age 80, left hemisphere 215.2
Corticomedial amygdala
nTPM: 220.1
2428 Male, age 75, right hemisphere 247.1
2242 Female, age 91, right hemisphere 229.4
2829 Male, age 80, left hemisphere 224.8
2240 Male, age 76, both hemispheres 221.3
2429 Female, age 94, left hemisphere 208.9
2535 Female, age 67, right hemisphere 188.9
Lateral amygdala
nTPM: 222.3
2516 Male, age 75, right hemisphere 245.7
1883 Male, age 76, both hemispheres 237.3
2255 Female, age 91, right hemisphere 231.2
2256 Male, age 80, left hemisphere 213.1
2534 Female, age 94, left hemisphere 210.9
2830 Female, age 67, right hemisphere 195.8
Stria terminalis, bed nucleus
nTPM: 199.2
2201 Male, age 74, unknown 210.9
1974 Female, age 91, both hemispheres 198.7
2486 Female, age 94, both hemispheres 187.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 139.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 139.5
Samples: 152

Max nTPM: 499.4
Min nTPM: 34.9
Std nTPM: 73.1
Median nTPM: 122.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 499.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 436.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 381.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 333.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 318.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 295.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 286.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 285.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 274.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 272.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 261.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 261.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 261.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 257.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 254.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 252.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 234.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 233.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 210.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 207.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 206.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 203.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 194.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 192.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 192.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 187.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 176.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 174.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 172.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 172.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 171.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 169.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 169.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 166.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 157.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 156.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 155.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 155.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 155.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 154.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 152.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 152.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 152.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 149.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 147.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 146.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 145.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 145.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 144.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 143.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 142.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 142.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 141.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 139.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 137.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 136.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 135.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 133.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 132.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 132.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 130.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 130.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 129.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 128.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 128.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 127.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 127.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 126.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 124.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 124.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 123.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 123.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 122.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 122.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 122.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 121.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 121.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 119.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 118.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 118.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 118.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 117.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 117.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 117.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 116.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 115.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 115.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 114.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 113.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 113.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 113.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 112.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 110.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 109.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 108.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 108.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 106.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 105.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 104.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 104.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 103.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 103.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 102.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 99.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 98.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 98.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 96.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 96.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 95.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 94.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 93.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 91.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 90.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 90.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 89.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 86.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 85.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 83.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 82.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 82.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 81.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 79.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 77.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 76.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 75.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 74.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 74.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 72.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 72.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 71.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 63.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 63.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 62.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 61.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 59.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 53.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 52.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 51.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 49.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 48.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 45.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 35.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 34.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 182.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 182.3
FF:10151-102I7 76 years, female 182.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 35.2
Pig sample Sample description nTPM
Amygdala
nTPM: 35.2
Samples: 4

Max nTPM: 37.9
Min nTPM: 30.9
Sample A Female 37.9
Sample B Female 34.5
Sample C Male 30.9
Sample D Male 37.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 32.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 32.3
Samples: 4

Max nTPM: 37.0
Min nTPM: 28.2
Sample A Male 31.9
Sample B Male 28.2
Sample C Female 32.1
Sample D Female 37.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
68498247 Antisense, RP_050113_01_E12, Mouse strain C57BL/6J (56 days, male) 2.0

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