MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.2 nTPM
HPA:49.2 nTPM
GTEx:22.9 nTPM
FANTOM5:64.6 Scaled Tags Per Million
Pig:37.6 nTPM
Mouse:112.1 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.9
2586 Male, age 75, left hemisphere 70.9
2828 Female, age 72, unknown 53.2
2666 Male, age 74, left hemisphere 46.2
1827 Male, age 72, unknown 46.0
2219 Male, age 76, both hemispheres 44.2
1833 Male, age 53, unknown 42.7
2411 Female, age 72, unknown 39.5
1870 Female, age 42, unknown 39.2
1830 Male, age 51, unknown 39.0
2019 Male, age 18, unknown 38.3
Dorsal raphe nucleus
nTPM: 43.9
1828 Male, age 53, unknown 51.2
2047 Male, age 72, unknown 47.7
2016 Female, age 72, unknown 44.3
2298 Female, age 72, unknown 39.4
2750 Male, age 76, both hemispheres 36.7
Inferior colliculus
nTPM: 49.2
1848 Female, age 42, unknown 52.9
1890 Male, age 53, unknown 50.4
2849 Male, age 72, unknown 48.8
2097 Female, age 72, unknown 44.8
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Pedunculopontine tegmental nucleus
nTPM: 37.6
1921 Female, age 85, both hemispheres 38.2
2334 Male, age 80, both hemispheres 38.2
2338 Male, age 61, both hemispheres 36.3
Periaquaductal grey, anterior
nTPM: 47.6
1947 Male, age 18, unknown 48.7
2502 Female, age 75, unknown 47.3
1795 Male, age 51, unknown 46.8
Periaquaductal grey, dorsal
nTPM: 44.5
1840 Male, age 53, unknown 48.4
2464 Female, age 72, unknown 45.6
2850 Male, age 76, both hemispheres 42.6
1831 Male, age 72, unknown 41.6
Periaquaductal grey, lateral
nTPM: 41.1
2053 Male, age 18, unknown 45.8
2140 Male, age 76, both hemispheres 43.0
2272 Male, age 74, both hemispheres 34.5
Pretectal area
nTPM: 45.6
1816 Male, age 51, unknown 54.6
1817 Female, age 42, unknown 52.7
1944 Female, age 72, unknown 50.2
2825 Male, age 18, unknown 46.4
2407 Male, age 75, both hemispheres 46.0
1815 Male, age 53, unknown 44.2
2007 Male, age 72, unknown 44.1
2316 Male, age 76, right hemisphere 43.9
2667 Female, age 75, unknown 43.8
2224 Female, age 72, unknown 38.6
2273 Male, age 74, both hemispheres 36.8
Red nucleus
nTPM: 46.8
1954 Female, age 42, unknown 55.3
2588 Male, age 74, left hemisphere 53.6
2227 Male, age 72, unknown 49.3
1821 Female, age 72, unknown 47.6
2503 Female, age 72, unknown 47.3
1904 Male, age 53, unknown 46.5
1865 Male, age 51, unknown 45.9
2769 Male, age 72, unknown 45.3
2725 Female, age 75, unknown 44.6
2584 Male, age 75, left hemisphere 44.1
2823 Male, age 76, right hemisphere 43.5
2785 Male, age 18, unknown 38.3
Substantia nigra
nTPM: 47.4
2699 Male, age 18, unknown 54.8
1916 Female, age 42, unknown 52.4
2665 Male, age 74, both hemispheres 50.8
2583 Male, age 75, right hemisphere 50.1
2241 Male, age 72, unknown 48.4
1889 Female, age 72, unknown 46.9
1851 Male, age 51, unknown 45.7
2590 Female, age 75, unknown 44.2
1941 Male, age 53, unknown 42.4
2409 Female, age 72, unknown 38.0
Superior colliculus
nTPM: 47.9
2664 Male, age 75, both hemispheres 62.8
2668 Female, age 75, unknown 54.8
2087 Female, age 72, unknown 52.8
2261 Male, age 18, unknown 49.5
1839 Male, age 51, unknown 47.3
1796 Male, age 53, unknown 44.7
1995 Male, age 72, unknown 43.5
1895 Male, age 76, right hemisphere 42.4
1913 Female, age 42, unknown 41.4
2587 Male, age 74, left hemisphere 39.8
Ventral tegmental area
nTPM: 42.3
1915 Female, age 42, unknown 47.0
2410 Female, age 72, unknown 46.2
1942 Male, age 51, unknown 42.7
2218 Male, age 76, both hemispheres 40.6
2021 Male, age 53, unknown 40.3
2223 Female, age 72, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.9
Samples: 139

Max nTPM: 75.2
Min nTPM: 4.1
Std nTPM: 13.3
Median nTPM: 19.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 75.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 60.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 56.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 53.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 51.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 50.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 49.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 48.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 45.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 44.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.6
FF:10158-103A5 76 years, female 64.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.6
Pig sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 49.0
Min nTPM: 25.9
Sample A Female 32.8
Sample B Female 37.0
Sample C Male 49.0
Sample D Male 25.9
Periaqueductal gray
nTPM: 33.0
Samples: 3

Max nTPM: 39.5
Min nTPM: 27.8
Sample B Female 39.5
Sample C Male 31.6
Sample D Male 27.8
Substantia nigra
nTPM: 31.8
Samples: 4

Max nTPM: 44.1
Min nTPM: 23.9
Sample A Female 44.1
Sample B Female 24.0
Sample C Male 35.1
Sample D Male 23.9
Superior colliculi
nTPM: 37.6
Samples: 4

Max nTPM: 44.2
Min nTPM: 22.0
Sample A Female 42.6
Sample B Female 22.0
Sample C Male 44.2
Sample D Male 41.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.1
Samples: 4

Max nTPM: 121.7
Min nTPM: 103.7
Sample A Male 121.7
Sample B Male 108.8
Sample C Female 103.7
Sample D Female 114.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
70302051 Antisense, RP_050607_03_D12, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.