We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PKP4
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PKP4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:165.2 nTPM
HPA:165.2 nTPM
GTEx:129.8 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:70.1 nTPM
Mouse:60.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 165.2
Sample id Sample description nTPM
Amygdala
nTPM: 136.9
2695 Female, age 67, right hemisphere 193.5
2814 Male, age 76, right hemisphere 144.0
2517 Female, age 94, left hemisphere 120.3
2514 Male, age 75, right hemisphere 117.4
1987 Female, age 91, left hemisphere 109.3
Basal amygdala
nTPM: 139.3
2827 Female, age 67, right hemisphere 222.6
2685 Female, age 94, left hemisphere 132.0
2110 Male, age 80, left hemisphere 129.8
2609 Male, age 75, right hemisphere 124.0
1955 Male, age 76, both hemispheres 117.6
2243 Female, age 91, right hemisphere 109.6
Central amygdala
nTPM: 144.4
2826 Female, age 94, left hemisphere 225.4
1905 Male, age 76, both hemispheres 127.0
2239 Male, age 80, left hemisphere 126.5
2515 Male, age 75, right hemisphere 126.1
2701 Female, age 91, right hemisphere 116.9
Corticomedial amygdala
nTPM: 116.0
2535 Female, age 67, right hemisphere 152.4
2829 Male, age 80, left hemisphere 116.8
2428 Male, age 75, right hemisphere 113.9
2240 Male, age 76, both hemispheres 111.9
2242 Female, age 91, right hemisphere 102.5
2429 Female, age 94, left hemisphere 98.3
Lateral amygdala
nTPM: 165.2
2830 Female, age 67, right hemisphere 283.1
2516 Male, age 75, right hemisphere 160.4
2534 Female, age 94, left hemisphere 154.9
2256 Male, age 80, left hemisphere 143.4
1883 Male, age 76, both hemispheres 135.6
2255 Female, age 91, right hemisphere 113.7
Stria terminalis, bed nucleus
nTPM: 107.3
1974 Female, age 91, both hemispheres 115.3
2201 Male, age 74, unknown 113.7
2486 Female, age 94, both hemispheres 92.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 129.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 129.8
Samples: 152

Max nTPM: 695.6
Min nTPM: 10.2
Std nTPM: 98.7
Median nTPM: 99.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 695.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 402.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 400.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 379.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 379.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 365.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 353.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 350.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 330.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 301.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 295.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 282.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 279.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 266.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 265.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 259.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 255.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 239.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 238.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 238.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 218.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 218.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 217.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 215.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 212.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 210.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 210.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 208.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 207.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 206.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 205.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 204.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 202.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 196.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 187.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 185.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 170.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 164.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 161.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 160.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 158.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 156.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 150.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 148.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 143.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 143.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 141.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 140.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 140.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 139.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 138.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 134.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 131.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 129.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 127.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 125.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 118.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 117.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 117.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 116.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 115.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 115.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 114.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 109.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 108.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 107.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 105.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 104.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 103.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 102.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 100.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 99.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 99.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 99.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 97.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 95.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 93.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 92.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 89.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 89.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 83.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 82.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 81.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 80.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 80.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 78.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 77.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 76.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 75.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 73.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 73.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 72.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 72.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 72.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 72.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 71.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 71.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 70.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 69.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 68.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 67.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 67.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 66.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 66.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 65.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 64.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 64.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 63.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 63.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 63.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 62.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 60.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 59.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 58.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 58.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 56.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 56.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 55.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 55.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 54.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 54.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 53.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 51.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 51.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 49.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 48.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 48.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 47.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 47.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 46.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 46.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 45.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 44.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 44.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 42.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 42.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 42.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 38.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 38.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 37.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 36.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 34.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 33.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 31.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 28.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.8
FF:10151-102I7 76 years, female 69.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.1
Pig sample Sample description nTPM
Amygdala
nTPM: 70.1
Samples: 4

Max nTPM: 73.6
Min nTPM: 64.3
Sample A Female 72.7
Sample B Female 73.6
Sample C Male 69.9
Sample D Male 64.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 60.1
Samples: 4

Max nTPM: 64.9
Min nTPM: 57.6
Sample A Male 64.9
Sample B Male 59.3
Sample C Female 58.4
Sample D Female 57.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.