MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:217.1 nTPM
HPA:217.1 nTPM
GTEx:227.7 nTPM
FANTOM5:149.3 Scaled Tags Per Million
Pig:153.9 nTPM
Mouse:55.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 217.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 176.0
2666 Male, age 74, left hemisphere 217.4
1830 Male, age 51, unknown 205.0
2586 Male, age 75, left hemisphere 200.0
1833 Male, age 53, unknown 189.0
1870 Female, age 42, unknown 170.2
2411 Female, age 72, unknown 166.6
2828 Female, age 72, unknown 162.6
2019 Male, age 18, unknown 159.6
2219 Male, age 76, both hemispheres 145.6
1827 Male, age 72, unknown 144.3
Dorsal raphe nucleus
nTPM: 140.0
2750 Male, age 76, both hemispheres 198.0
1828 Male, age 53, unknown 141.1
2016 Female, age 72, unknown 131.9
2047 Male, age 72, unknown 127.7
2298 Female, age 72, unknown 101.3
Inferior colliculus
nTPM: 137.0
1890 Male, age 53, unknown 147.5
2849 Male, age 72, unknown 144.1
1848 Female, age 42, unknown 143.3
2097 Female, age 72, unknown 112.9
Median raphe nucleus
nTPM: 155.4
2220 Male, age 76, midline 155.4
Pedunculopontine tegmental nucleus
nTPM: 161.0
2338 Male, age 61, both hemispheres 178.4
2334 Male, age 80, both hemispheres 165.8
1921 Female, age 85, both hemispheres 138.8
Periaquaductal grey, anterior
nTPM: 133.9
1947 Male, age 18, unknown 150.3
2502 Female, age 75, unknown 126.2
1795 Male, age 51, unknown 125.4
Periaquaductal grey, dorsal
nTPM: 116.6
2464 Female, age 72, unknown 133.1
1831 Male, age 72, unknown 128.1
1840 Male, age 53, unknown 109.0
2850 Male, age 76, both hemispheres 96.4
Periaquaductal grey, lateral
nTPM: 117.2
2053 Male, age 18, unknown 135.9
2272 Male, age 74, both hemispheres 120.3
2140 Male, age 76, both hemispheres 95.6
Pretectal area
nTPM: 130.7
1815 Male, age 53, unknown 157.1
2407 Male, age 75, both hemispheres 149.8
2825 Male, age 18, unknown 142.1
1817 Female, age 42, unknown 141.9
2007 Male, age 72, unknown 136.9
2316 Male, age 76, right hemisphere 127.0
1944 Female, age 72, unknown 126.2
1816 Male, age 51, unknown 123.2
2667 Female, age 75, unknown 114.8
2224 Female, age 72, unknown 113.3
2273 Male, age 74, both hemispheres 105.0
Red nucleus
nTPM: 217.1
2588 Male, age 74, left hemisphere 269.6
2584 Male, age 75, left hemisphere 235.0
1865 Male, age 51, unknown 227.2
2503 Female, age 72, unknown 226.5
1904 Male, age 53, unknown 226.4
2823 Male, age 76, right hemisphere 220.9
2769 Male, age 72, unknown 209.0
2227 Male, age 72, unknown 208.8
1954 Female, age 42, unknown 203.5
1821 Female, age 72, unknown 203.3
2725 Female, age 75, unknown 200.9
2785 Male, age 18, unknown 173.6
Substantia nigra
nTPM: 166.8
2665 Male, age 74, both hemispheres 198.2
2583 Male, age 75, right hemisphere 193.3
2590 Female, age 75, unknown 180.4
2409 Female, age 72, unknown 173.4
1851 Male, age 51, unknown 168.1
1889 Female, age 72, unknown 158.5
2699 Male, age 18, unknown 154.5
1916 Female, age 42, unknown 151.0
2241 Male, age 72, unknown 146.2
1941 Male, age 53, unknown 144.0
Superior colliculus
nTPM: 152.0
2668 Female, age 75, unknown 181.9
2587 Male, age 74, left hemisphere 181.8
1995 Male, age 72, unknown 167.3
1839 Male, age 51, unknown 159.4
1913 Female, age 42, unknown 155.7
1895 Male, age 76, right hemisphere 142.2
2664 Male, age 75, both hemispheres 142.1
1796 Male, age 53, unknown 132.0
2261 Male, age 18, unknown 132.0
2087 Female, age 72, unknown 126.0
Ventral tegmental area
nTPM: 165.7
2223 Female, age 72, unknown 233.3
2410 Female, age 72, unknown 184.8
2218 Male, age 76, both hemispheres 155.5
1915 Female, age 42, unknown 142.0
1942 Male, age 51, unknown 139.5
2021 Male, age 53, unknown 139.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 227.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 227.7
Samples: 139

Max nTPM: 607.5
Min nTPM: 34.3
Std nTPM: 128.8
Median nTPM: 185.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 607.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 600.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 572.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 556.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 532.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 502.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 479.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 473.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 463.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 450.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 449.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 149.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 149.3
FF:10158-103A5 76 years, female 149.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 153.9
Pig sample Sample description nTPM
Midbrain
nTPM: 153.9
Samples: 4

Max nTPM: 337.3
Min nTPM: 77.2
Sample A Female 337.3
Sample B Female 102.1
Sample C Male 99.0
Sample D Male 77.2
Periaqueductal gray
nTPM: 81.2
Samples: 3

Max nTPM: 85.3
Min nTPM: 73.7
Sample B Female 84.5
Sample C Male 73.7
Sample D Male 85.3
Substantia nigra
nTPM: 124.3
Samples: 4

Max nTPM: 177.6
Min nTPM: 74.0
Sample A Female 127.2
Sample B Female 74.0
Sample C Male 118.4
Sample D Male 177.6
Superior colliculi
nTPM: 98.4
Samples: 4

Max nTPM: 117.1
Min nTPM: 64.4
Sample A Female 97.0
Sample B Female 64.4
Sample C Male 115.2
Sample D Male 117.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 59.4
Min nTPM: 51.9
Sample A Male 56.8
Sample B Male 52.4
Sample C Female 51.9
Sample D Female 59.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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