BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:50.1 nTPM
HPA:50.1 nTPM
GTEx:47.1 nTPM
FANTOM5:108.3 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:35.5 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040471Antibody CAB037260
Glial cells MediumMedium
Neuronal cells MediumMedium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.5
2481 Female, age 94, left hemisphere 46.1
2288 Male, age 75, left hemisphere 44.6
2846 Female, age 79, unknown 43.4
1857 Female, age 85, left hemisphere 40.0
1854 Male, age 80, left hemisphere 39.8
2290 Female, age 72, unknown 39.6
1781 Male, age 74, unknown 39.3
2289 Male, age 61, right hemisphere 39.0
Claustrum
nTPM: 39.9
1956 Male, age 74, unknown 44.6
2292 Female, age 85, both hemispheres 44.4
2491 Male, age 75, both hemispheres 40.4
2196 Female, age 79, unknown 40.3
2198 Male, age 80, both hemispheres 40.1
2392 Female, age 94, both hemispheres 38.8
2568 Male, age 61, both hemispheres 37.8
2284 Female, age 91, both hemispheres 37.7
2645 Female, age 72, unknown 34.8
Globus pallidus, externus
nTPM: 48.1
1996 Male, age 80, right hemisphere 53.8
2772 Female, age 79, unknown 52.4
2395 Male, age 75, both hemispheres 48.2
2567 Female, age 72, unknown 43.4
2646 Male, age 61, right hemisphere 42.6
Globus pallidus, internus
nTPM: 50.1
2287 Male, age 75, right hemisphere 55.3
2778 Female, age 91, both hemispheres 52.7
2111 Female, age 85, right hemisphere 50.5
1818 Male, age 74, unknown 49.3
2037 Male, age 80, right hemisphere 47.9
2483 Female, age 94, right hemisphere 47.8
2566 Female, age 72, unknown 47.0
Nucleus accumbens
nTPM: 41.6
2391 Female, age 94, left hemisphere 47.4
2286 Male, age 75, left hemisphere 45.6
2698 Female, age 72, unknown 44.7
1806 Female, age 85, left hemisphere 39.8
2732 Male, age 80, right hemisphere 39.6
2824 Male, age 61, right hemisphere 39.2
1783 Male, age 74, unknown 38.9
1856 Female, age 91, right hemisphere 37.5
Nucleus basalis of Meynert
nTPM: 40.3
2569 Male, age 61, both hemispheres 43.2
2484 Female, age 94, left hemisphere 39.5
2821 Male, age 75, both hemispheres 39.3
2393 Male, age 80, right hemisphere 39.2
Nucleus of the diagonal band
nTPM: 37.6
1812 Female, age 91, both hemispheres 40.7
2775 Male, age 80, right hemisphere 37.8
2195 Female, age 85, both hemispheres 37.0
2029 Male, age 61, right hemisphere 36.2
1979 Male, age 74, unknown 36.1
Olfactory tubercle
nTPM: 36.2
1846 Male, age 80, right hemisphere 38.2
1998 Female, age 91, both hemispheres 36.7
2856 Male, age 75, right hemisphere 36.0
2487 Female, age 94, left hemisphere 33.9
Putamen
nTPM: 40.7
2482 Female, age 94, left hemisphere 46.9
1829 Male, age 74, unknown 42.0
2466 Female, age 79, unknown 39.7
1937 Female, age 91, right hemisphere 39.6
2647 Male, age 75, left hemisphere 39.0
1838 Male, age 80, right hemisphere 38.8
2489 Female, age 72, unknown 38.6
Septal nuclei
nTPM: 37.2
2394 Male, age 61, left hemisphere 38.8
2629 Female, age 94, right hemisphere 37.7
2199 Male, age 80, right hemisphere 37.4
2031 Female, age 72, unknown 37.2
1960 Male, age 74, unknown 37.0
2059 Female, age 85, both hemispheres 36.1
2009 Female, age 91, both hemispheres 36.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.7
Samples: 246

Max nTPM: 80.7
Min nTPM: 24.6
Std nTPM: 7.5
Median nTPM: 38.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 80.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 72.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 70.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 65.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 65.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 56.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 56.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 56.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 54.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 51.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 51.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.6
Samples: 246

Max nTPM: 91.2
Min nTPM: 20.3
Std nTPM: 9.2
Median nTPM: 32.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 91.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 72.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 70.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 67.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 62.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 58.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 58.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 57.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 55.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 54.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 52.5
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Brain - Putamen (basal ganglia)
Average nTPM: 47.1
Samples: 205

Max nTPM: 133.5
Min nTPM: 30.6
Std nTPM: 10.9
Median nTPM: 45.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 133.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 82.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 81.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 78.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 78.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 75.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 75.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 68.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 67.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 65.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 65.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.2
FF:10164-103B2 76 years, female 71.2
Globus pallidus
Scaled Tags Per Million: 108.3
FF:10161-103A8 76 years, female 120.3
FF:10175-103C4 60 years, female 96.3
Nucleus accumbens
Scaled Tags Per Million: 70.6
FF:10037-101F1 23-56 years, mixed 70.6
Putamen
Scaled Tags Per Million: 82.0
FF:10176-103C5 60 years, female 82.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 71.0
Pig sample Sample description nTPM
Caudate
nTPM: 41.0
Samples: 4

Max nTPM: 44.4
Min nTPM: 37.3
Sample A Female 41.5
Sample B Female 40.6
Sample C Male 44.4
Sample D Male 37.3
Putamen
nTPM: 71.1
Samples: 4

Max nTPM: 98.2
Min nTPM: 48.3
Sample A Female 98.2
Sample B Female 48.3
Sample C Male 71.4
Sample D Male 66.3
Septum
nTPM: 52.4
Samples: 4

Max nTPM: 58.5
Min nTPM: 44.5
Sample A Female 54.8
Sample B Female 44.5
Sample C Male 58.5
Sample D Male 51.9
Ventral pallidum
nTPM: 56.3
Samples: 4

Max nTPM: 65.3
Min nTPM: 37.8
Sample A Female 37.8
Sample B Female 57.7
Sample C Male 65.3
Sample D Male 64.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.5
Samples: 4

Max nTPM: 35.9
Min nTPM: 31.3
Sample A Male 31.4
Sample B Male 31.3
Sample C Female 35.9
Sample D Female 35.3
Septum
nTPM: 35.5
Samples: 4

Max nTPM: 37.7
Min nTPM: 33.7
Sample A Male 34.7
Sample B Male 37.7
Sample C Female 36.0
Sample D Female 33.7
Ventral forebrain
nTPM: 34.6
Samples: 4

Max nTPM: 35.4
Min nTPM: 33.7
Sample A Male 33.9
Sample B Male 33.7
Sample C Female 35.3
Sample D Female 35.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
70445592 Antisense, RP_050614_04_B07, Mouse strain C57BL/6J (56 days, male) 1.5
74988519 Antisense, RP_060315_05_E07, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 1.6
70445592 Antisense, RP_050614_04_B07, Mouse strain C57BL/6J (56 days, male) 1.7
74988519 Antisense, RP_060315_05_E07, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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