BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.9 nTPM
HPA:5.9 nTPM
GTEx:10.5 nTPM
FANTOM5:86.5 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA037475
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.1
2846 Female, age 79, unknown 6.3
1857 Female, age 85, left hemisphere 5.9
2290 Female, age 72, unknown 5.9
1854 Male, age 80, left hemisphere 5.8
1781 Male, age 74, unknown 5.7
2288 Male, age 75, left hemisphere 4.7
2289 Male, age 61, right hemisphere 3.6
2481 Female, age 94, left hemisphere 2.8
Claustrum
nTPM: 5.0
1956 Male, age 74, unknown 7.0
2196 Female, age 79, unknown 6.5
2491 Male, age 75, both hemispheres 5.9
2292 Female, age 85, both hemispheres 5.4
2198 Male, age 80, both hemispheres 5.3
2568 Male, age 61, both hemispheres 4.2
2645 Female, age 72, unknown 4.1
2392 Female, age 94, both hemispheres 3.9
2284 Female, age 91, both hemispheres 3.0
Globus pallidus, externus
nTPM: 5.3
1996 Male, age 80, right hemisphere 6.8
2646 Male, age 61, right hemisphere 6.8
2567 Female, age 72, unknown 4.9
2772 Female, age 79, unknown 4.8
2395 Male, age 75, both hemispheres 3.1
Globus pallidus, internus
nTPM: 5.9
2287 Male, age 75, right hemisphere 7.9
2483 Female, age 94, right hemisphere 6.8
2778 Female, age 91, both hemispheres 5.9
1818 Male, age 74, unknown 5.6
2566 Female, age 72, unknown 5.5
2037 Male, age 80, right hemisphere 5.0
2111 Female, age 85, right hemisphere 4.7
Nucleus accumbens
nTPM: 5.0
2698 Female, age 72, unknown 8.0
2391 Female, age 94, left hemisphere 5.5
1783 Male, age 74, unknown 5.4
1856 Female, age 91, right hemisphere 4.9
1806 Female, age 85, left hemisphere 4.4
2286 Male, age 75, left hemisphere 4.3
2824 Male, age 61, right hemisphere 4.2
2732 Male, age 80, right hemisphere 3.0
Nucleus basalis of Meynert
nTPM: 5.3
2569 Male, age 61, both hemispheres 6.6
2821 Male, age 75, both hemispheres 5.8
2393 Male, age 80, right hemisphere 4.4
2484 Female, age 94, left hemisphere 4.3
Nucleus of the diagonal band
nTPM: 4.8
1979 Male, age 74, unknown 6.7
1812 Female, age 91, both hemispheres 5.0
2775 Male, age 80, right hemisphere 5.0
2195 Female, age 85, both hemispheres 4.1
2029 Male, age 61, right hemisphere 3.1
Olfactory tubercle
nTPM: 4.7
1846 Male, age 80, right hemisphere 5.3
2856 Male, age 75, right hemisphere 4.9
1998 Female, age 91, both hemispheres 4.6
2487 Female, age 94, left hemisphere 4.0
Putamen
nTPM: 5.0
1838 Male, age 80, right hemisphere 6.6
2482 Female, age 94, left hemisphere 5.9
2647 Male, age 75, left hemisphere 5.8
1829 Male, age 74, unknown 4.8
2489 Female, age 72, unknown 4.7
1937 Female, age 91, right hemisphere 4.6
2466 Female, age 79, unknown 2.5
Septal nuclei
nTPM: 4.0
2199 Male, age 80, right hemisphere 5.0
2629 Female, age 94, right hemisphere 5.0
2031 Female, age 72, unknown 4.5
1960 Male, age 74, unknown 3.9
2009 Female, age 91, both hemispheres 3.8
2059 Female, age 85, both hemispheres 3.0
2394 Male, age 61, left hemisphere 2.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.9
Samples: 246

Max nTPM: 15.1
Min nTPM: 4.3
Std nTPM: 1.8
Median nTPM: 9.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 15.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 14.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 14.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 14.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 14.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 13.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 13.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 13.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 13.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 13.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 13.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.5
Samples: 246

Max nTPM: 18.4
Min nTPM: 4.2
Std nTPM: 2.4
Median nTPM: 10.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 18.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 18.0
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 17.4
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 16.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 16.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 15.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 15.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 15.3
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 15.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 15.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 14.9
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Brain - Putamen (basal ganglia)
Average nTPM: 9.7
Samples: 205

Max nTPM: 16.6
Min nTPM: 5.3
Std nTPM: 1.8
Median nTPM: 9.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 16.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 15.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 15.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 14.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 13.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 13.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 13.8
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 13.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 13.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 13.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 13.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.8
FF:10164-103B2 76 years, female 72.8
Globus pallidus
Scaled Tags Per Million: 74.5
FF:10175-103C4 60 years, female 78.1
FF:10161-103A8 76 years, female 71.0
Nucleus accumbens
Scaled Tags Per Million: 75.3
FF:10037-101F1 23-56 years, mixed 75.3
Putamen
Scaled Tags Per Million: 86.5
FF:10176-103C5 60 years, female 86.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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