MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.4 nTPM
HPA:67.4 nTPM
GTEx:97.4 nTPM
FANTOM5:163.5 Scaled Tags Per Million
Pig:36.3 nTPM
Mouse:28.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.4
2411 Female, age 72, unknown 67.5
1870 Female, age 42, unknown 66.4
2019 Male, age 18, unknown 65.5
1833 Male, age 53, unknown 63.9
1830 Male, age 51, unknown 63.6
2666 Male, age 74, left hemisphere 60.6
1827 Male, age 72, unknown 60.0
2219 Male, age 76, both hemispheres 59.8
2828 Female, age 72, unknown 58.7
2586 Male, age 75, left hemisphere 58.2
Dorsal raphe nucleus
nTPM: 60.6
2750 Male, age 76, both hemispheres 67.2
2298 Female, age 72, unknown 59.9
1828 Male, age 53, unknown 58.9
2047 Male, age 72, unknown 58.5
2016 Female, age 72, unknown 58.3
Inferior colliculus
nTPM: 59.6
2097 Female, age 72, unknown 61.9
1890 Male, age 53, unknown 60.3
1848 Female, age 42, unknown 60.0
2849 Male, age 72, unknown 56.3
Median raphe nucleus
nTPM: 63.9
2220 Male, age 76, midline 63.9
Pedunculopontine tegmental nucleus
nTPM: 62.4
2334 Male, age 80, both hemispheres 65.2
1921 Female, age 85, both hemispheres 61.7
2338 Male, age 61, both hemispheres 60.3
Periaquaductal grey, anterior
nTPM: 58.8
2502 Female, age 75, unknown 62.6
1947 Male, age 18, unknown 57.5
1795 Male, age 51, unknown 56.4
Periaquaductal grey, dorsal
nTPM: 56.8
2464 Female, age 72, unknown 59.2
1831 Male, age 72, unknown 57.4
2850 Male, age 76, both hemispheres 55.3
1840 Male, age 53, unknown 55.0
Periaquaductal grey, lateral
nTPM: 56.1
2053 Male, age 18, unknown 57.7
2272 Male, age 74, both hemispheres 56.4
2140 Male, age 76, both hemispheres 54.3
Pretectal area
nTPM: 61.4
2007 Male, age 72, unknown 65.5
1815 Male, age 53, unknown 64.8
1944 Female, age 72, unknown 64.7
1817 Female, age 42, unknown 64.0
1816 Male, age 51, unknown 63.4
2316 Male, age 76, right hemisphere 60.0
2667 Female, age 75, unknown 59.1
2224 Female, age 72, unknown 58.9
2273 Male, age 74, both hemispheres 58.8
2825 Male, age 18, unknown 58.6
2407 Male, age 75, both hemispheres 57.4
Red nucleus
nTPM: 67.4
1821 Female, age 72, unknown 72.2
1904 Male, age 53, unknown 71.2
2503 Female, age 72, unknown 70.1
1865 Male, age 51, unknown 69.9
1954 Female, age 42, unknown 68.1
2227 Male, age 72, unknown 66.8
2769 Male, age 72, unknown 66.8
2785 Male, age 18, unknown 66.3
2823 Male, age 76, right hemisphere 66.0
2725 Female, age 75, unknown 65.3
2588 Male, age 74, left hemisphere 64.5
2584 Male, age 75, left hemisphere 61.3
Substantia nigra
nTPM: 62.1
1889 Female, age 72, unknown 66.1
2409 Female, age 72, unknown 64.1
2241 Male, age 72, unknown 64.0
1851 Male, age 51, unknown 63.0
1916 Female, age 42, unknown 62.2
2590 Female, age 75, unknown 61.2
2583 Male, age 75, right hemisphere 61.1
1941 Male, age 53, unknown 60.7
2699 Male, age 18, unknown 60.5
2665 Male, age 74, both hemispheres 58.1
Superior colliculus
nTPM: 61.2
1913 Female, age 42, unknown 64.8
1995 Male, age 72, unknown 63.1
2087 Female, age 72, unknown 62.8
2587 Male, age 74, left hemisphere 62.7
2261 Male, age 18, unknown 62.4
2668 Female, age 75, unknown 61.5
1895 Male, age 76, right hemisphere 60.5
1796 Male, age 53, unknown 60.2
1839 Male, age 51, unknown 59.3
2664 Male, age 75, both hemispheres 54.7
Ventral tegmental area
nTPM: 63.1
2223 Female, age 72, unknown 67.8
2410 Female, age 72, unknown 66.9
2218 Male, age 76, both hemispheres 61.9
1942 Male, age 51, unknown 61.1
1915 Female, age 42, unknown 61.0
2021 Male, age 53, unknown 60.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.4
Samples: 139

Max nTPM: 249.5
Min nTPM: 44.2
Std nTPM: 27.9
Median nTPM: 93.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 249.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 219.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 156.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 146.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 144.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 144.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 141.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 139.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 139.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 135.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 134.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 163.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.5
FF:10158-103A5 76 years, female 163.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.3
Pig sample Sample description nTPM
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 61.7
Min nTPM: 24.7
Sample A Female 61.7
Sample B Female 32.8
Sample C Male 24.7
Sample D Male 25.9
Periaqueductal gray
nTPM: 25.0
Samples: 3

Max nTPM: 28.9
Min nTPM: 22.5
Sample B Female 28.9
Sample C Male 22.5
Sample D Male 23.5
Substantia nigra
nTPM: 31.8
Samples: 4

Max nTPM: 41.0
Min nTPM: 23.2
Sample A Female 36.3
Sample B Female 23.2
Sample C Male 26.8
Sample D Male 41.0
Superior colliculi
nTPM: 29.3
Samples: 4

Max nTPM: 34.2
Min nTPM: 21.5
Sample A Female 34.2
Sample B Female 21.5
Sample C Male 28.2
Sample D Male 33.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 29.3
Min nTPM: 25.8
Sample A Male 29.0
Sample B Male 29.3
Sample C Female 25.8
Sample D Female 29.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
545107 Antisense, RP_040825_02_D08, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.