MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:101.5 nTPM
HPA:101.5 nTPM
GTEx:123.0 nTPM
FANTOM5:62.6 Scaled Tags Per Million
Pig:42.2 nTPM
Mouse:21.4 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 101.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.3
2586 Male, age 75, left hemisphere 101.5
2019 Male, age 18, unknown 99.7
2411 Female, age 72, unknown 98.8
1827 Male, age 72, unknown 98.7
1870 Female, age 42, unknown 98.2
2828 Female, age 72, unknown 96.0
2666 Male, age 74, left hemisphere 95.7
2219 Male, age 76, both hemispheres 95.1
1830 Male, age 51, unknown 94.5
1833 Male, age 53, unknown 94.5
Dorsal raphe nucleus
nTPM: 100.0
2298 Female, age 72, unknown 105.7
2047 Male, age 72, unknown 101.6
2750 Male, age 76, both hemispheres 100.3
1828 Male, age 53, unknown 98.5
2016 Female, age 72, unknown 93.8
Inferior colliculus
nTPM: 96.7
1890 Male, age 53, unknown 100.7
2097 Female, age 72, unknown 100.0
1848 Female, age 42, unknown 93.8
2849 Male, age 72, unknown 92.4
Median raphe nucleus
nTPM: 100.1
2220 Male, age 76, midline 100.1
Pedunculopontine tegmental nucleus
nTPM: 98.0
2334 Male, age 80, both hemispheres 99.5
2338 Male, age 61, both hemispheres 97.4
1921 Female, age 85, both hemispheres 97.2
Periaquaductal grey, anterior
nTPM: 99.8
2502 Female, age 75, unknown 101.0
1947 Male, age 18, unknown 99.4
1795 Male, age 51, unknown 98.9
Periaquaductal grey, dorsal
nTPM: 95.6
1840 Male, age 53, unknown 96.4
2850 Male, age 76, both hemispheres 96.2
2464 Female, age 72, unknown 95.6
1831 Male, age 72, unknown 94.3
Periaquaductal grey, lateral
nTPM: 95.6
2053 Male, age 18, unknown 97.9
2272 Male, age 74, both hemispheres 95.8
2140 Male, age 76, both hemispheres 93.2
Pretectal area
nTPM: 100.9
1816 Male, age 51, unknown 108.2
1944 Female, age 72, unknown 107.4
2007 Male, age 72, unknown 105.3
1817 Female, age 42, unknown 105.2
2667 Female, age 75, unknown 103.9
2273 Male, age 74, both hemispheres 99.3
1815 Male, age 53, unknown 99.2
2224 Female, age 72, unknown 97.2
2407 Male, age 75, both hemispheres 97.2
2825 Male, age 18, unknown 94.5
2316 Male, age 76, right hemisphere 92.8
Red nucleus
nTPM: 99.5
1821 Female, age 72, unknown 104.3
2725 Female, age 75, unknown 103.0
1865 Male, age 51, unknown 101.3
1904 Male, age 53, unknown 100.5
2769 Male, age 72, unknown 100.2
2503 Female, age 72, unknown 99.8
2785 Male, age 18, unknown 99.7
2823 Male, age 76, right hemisphere 98.4
2227 Male, age 72, unknown 98.0
1954 Female, age 42, unknown 97.7
2588 Male, age 74, left hemisphere 95.6
2584 Male, age 75, left hemisphere 95.0
Substantia nigra
nTPM: 101.5
1916 Female, age 42, unknown 111.5
1851 Male, age 51, unknown 104.8
1889 Female, age 72, unknown 103.6
1941 Male, age 53, unknown 102.0
2665 Male, age 74, both hemispheres 101.2
2699 Male, age 18, unknown 100.2
2583 Male, age 75, right hemisphere 99.4
2241 Male, age 72, unknown 98.7
2409 Female, age 72, unknown 98.6
2590 Female, age 75, unknown 95.4
Superior colliculus
nTPM: 97.9
1796 Male, age 53, unknown 101.0
2261 Male, age 18, unknown 100.3
2087 Female, age 72, unknown 99.5
1913 Female, age 42, unknown 99.4
1995 Male, age 72, unknown 99.4
2587 Male, age 74, left hemisphere 99.0
2664 Male, age 75, both hemispheres 96.7
2668 Female, age 75, unknown 96.3
1895 Male, age 76, right hemisphere 94.2
1839 Male, age 51, unknown 93.2
Ventral tegmental area
nTPM: 100.5
2410 Female, age 72, unknown 103.0
1915 Female, age 42, unknown 102.8
2218 Male, age 76, both hemispheres 102.4
2223 Female, age 72, unknown 100.9
1942 Male, age 51, unknown 97.7
2021 Male, age 53, unknown 96.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 123.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.0
Samples: 139

Max nTPM: 229.5
Min nTPM: 68.1
Std nTPM: 25.7
Median nTPM: 118.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 229.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 205.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 203.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 201.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 184.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 172.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 171.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 169.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 168.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 168.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 168.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.6
FF:10158-103A5 76 years, female 62.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.2
Pig sample Sample description nTPM
Midbrain
nTPM: 42.0
Samples: 4

Max nTPM: 52.6
Min nTPM: 36.3
Sample A Female 52.6
Sample B Female 36.3
Sample C Male 42.5
Sample D Male 36.7
Periaqueductal gray
nTPM: 34.1
Samples: 3

Max nTPM: 40.1
Min nTPM: 30.4
Sample B Female 31.8
Sample C Male 40.1
Sample D Male 30.4
Substantia nigra
nTPM: 39.0
Samples: 4

Max nTPM: 53.9
Min nTPM: 28.6
Sample A Female 53.9
Sample B Female 32.2
Sample C Male 41.2
Sample D Male 28.6
Superior colliculi
nTPM: 42.2
Samples: 4

Max nTPM: 49.1
Min nTPM: 36.0
Sample A Female 49.1
Sample B Female 36.0
Sample C Male 44.1
Sample D Male 39.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 26.8
Min nTPM: 16.4
Sample A Male 26.8
Sample B Male 16.4
Sample C Female 19.7
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
68563134 Antisense, RP_050125_01_B09, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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