HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:19.7 nTPM
HPA:19.7 nTPM
GTEx:21.3 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Pig:6.5 nTPM
Mouse:46.9 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047778
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.7
Sample id Sample description nTPM
Hippocampus
nTPM: 18.6
1898 Male, age 80, left hemisphere 20.3
1911 Female, age 85, right hemisphere 19.8
2529 Female, age 94, left hemisphere 18.5
2621 Female, age 67, right hemisphere 18.2
2148 Female, age 91, left hemisphere 18.0
1855 Male, age 76, left hemisphere 17.1
Dentate gyrus
nTPM: 18.9
2530 Female, age 94, left hemisphere 20.3
1927 Female, age 91, both hemispheres 19.4
2010 Male, age 76, both hemispheres 19.3
2528 Male, age 74, both hemispheres 18.6
2531 Female, age 67, both hemispheres 18.0
2246 Female, age 85, both hemispheres 17.8
Entorhinal gyrus
nTPM: 19.5
2613 Female, age 94, left hemisphere 20.5
2764 Male, age 80, right hemisphere 20.1
1938 Female, age 85, left hemisphere 19.9
2117 Female, age 91, right hemisphere 19.3
1787 Male, age 76, left hemisphere 19.1
2686 Male, age 75, right hemisphere 18.0
Hippocampus, CA1
nTPM: 19.4
2749 Male, age 80, left hemisphere 24.9
2082 Female, age 91, right hemisphere 18.5
2527 Male, age 74, both hemispheres 18.3
1873 Female, age 85, both hemispheres 18.0
2045 Male, age 76, both hemispheres 17.6
Hippocampus, CA2
nTPM: 19.7
1963 Male, age 80, left hemisphere 21.5
2437 Female, age 94, left hemisphere 20.6
1892 Male, age 76, both hemispheres 20.0
1940 Female, age 85, left hemisphere 18.9
2249 Male, age 74, both hemispheres 18.8
2113 Female, age 91, right hemisphere 18.5
Hippocampus, CA3
nTPM: 19.0
2137 Male, age 80, left hemisphere 21.6
2861 Female, age 67, both hemispheres 19.4
2620 Female, age 94, left hemisphere 18.5
1891 Female, age 85, both hemispheres 18.4
1867 Male, age 76, both hemispheres 18.3
2436 Male, age 74, both hemispheres 17.9
Parahippocampal cortex
nTPM: 18.6
1933 Female, age 85, both hemispheres 19.9
2245 Female, age 91, both hemispheres 19.3
1990 Female, age 91, right hemisphere 18.9
2250 Female, age 67, right hemisphere 18.8
2622 Female, age 67, right hemisphere 18.8
1850 Male, age 80, both hemispheres 18.6
2018 Male, age 76, both hemispheres 18.4
2692 Male, age 74, both hemispheres 18.4
2532 Female, age 72, left hemisphere 18.3
2693 Female, age 94, both hemispheres 17.1
Perirhinal gyrus
nTPM: 19.2
1794 Male, age 80, right hemisphere 21.0
1847 Female, age 91, left hemisphere 19.4
1841 Female, age 85, right hemisphere 18.9
2521 Female, age 94, right hemisphere 18.8
2848 Male, age 76, right hemisphere 17.9
Subiculum
nTPM: 18.3
1901 Male, age 80, both hemispheres 20.5
2042 Male, age 76, both hemispheres 19.2
1977 Female, age 85, both hemispheres 18.9
2729 Female, age 91, right hemisphere 17.6
2619 Male, age 74, both hemispheres 17.5
2438 Female, age 94, left hemisphere 16.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.3
Samples: 197

Max nTPM: 37.3
Min nTPM: 12.4
Std nTPM: 4.4
Median nTPM: 20.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 37.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 32.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 32.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 32.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 31.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 29.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 29.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 29.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 29.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 29.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 29.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.5
FF:10153-102I9 76 years, female 15.5
FF:10169-103B7 60 years, female 11.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 6.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.8
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.1
Sample A Female 6.4
Sample B Female 6.3
Sample C Male 5.5
Sample D Male 5.1
Entorhinal cortex
nTPM: 6.5
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.0
Sample A Female 6.0
Sample B Female 6.4
Sample C Male 6.7
Sample D Male 7.0
Subiculum
nTPM: 5.6
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.8
Sample A Female 4.8
Sample B Female 5.8
Sample C Male 6.1
Sample D Male 5.8
Ventral hippocampus
nTPM: 6.4
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.8
Sample A Female 6.5
Sample B Female 5.8
Sample C Male 7.4
Sample D Male 5.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 46.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.7
Samples: 4

Max nTPM: 45.6
Min nTPM: 40.4
Sample A Male 40.4
Sample B Male 42.3
Sample C Female 45.6
Sample D Female 42.6
Hippocampal formation
nTPM: 46.9
Samples: 4

Max nTPM: 49.9
Min nTPM: 42.7
Sample A Male 42.7
Sample B Male 46.1
Sample C Female 49.0
Sample D Female 49.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
638726 Antisense, RP_040831_02_E04, Mouse strain C57BL/6J (56 days, male) 2.8

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