BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:36.2 nTPM
HPA:36.2 nTPM
GTEx:31.3 nTPM
FANTOM5:81.4 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA036293
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.5
2481 Female, age 94, left hemisphere 40.7
1854 Male, age 80, left hemisphere 36.1
1857 Female, age 85, left hemisphere 35.8
2290 Female, age 72, unknown 35.6
2846 Female, age 79, unknown 35.0
2288 Male, age 75, left hemisphere 34.6
1781 Male, age 74, unknown 33.3
2289 Male, age 61, right hemisphere 32.8
Claustrum
nTPM: 33.1
2196 Female, age 79, unknown 35.4
2198 Male, age 80, both hemispheres 33.8
2392 Female, age 94, both hemispheres 33.8
1956 Male, age 74, unknown 33.4
2491 Male, age 75, both hemispheres 33.3
2568 Male, age 61, both hemispheres 32.9
2292 Female, age 85, both hemispheres 32.8
2284 Female, age 91, both hemispheres 31.5
2645 Female, age 72, unknown 31.4
Globus pallidus, externus
nTPM: 35.4
2772 Female, age 79, unknown 36.0
2567 Female, age 72, unknown 35.7
1996 Male, age 80, right hemisphere 35.5
2646 Male, age 61, right hemisphere 35.5
2395 Male, age 75, both hemispheres 34.2
Globus pallidus, internus
nTPM: 36.2
2483 Female, age 94, right hemisphere 38.4
2287 Male, age 75, right hemisphere 38.2
2111 Female, age 85, right hemisphere 36.9
2778 Female, age 91, both hemispheres 36.5
2037 Male, age 80, right hemisphere 35.0
1818 Male, age 74, unknown 34.9
2566 Female, age 72, unknown 33.8
Nucleus accumbens
nTPM: 34.9
2391 Female, age 94, left hemisphere 36.8
2286 Male, age 75, left hemisphere 36.0
2824 Male, age 61, right hemisphere 35.5
1806 Female, age 85, left hemisphere 34.6
1856 Female, age 91, right hemisphere 34.5
2698 Female, age 72, unknown 34.5
1783 Male, age 74, unknown 34.4
2732 Male, age 80, right hemisphere 33.2
Nucleus basalis of Meynert
nTPM: 34.2
2569 Male, age 61, both hemispheres 35.8
2393 Male, age 80, right hemisphere 34.0
2484 Female, age 94, left hemisphere 33.8
2821 Male, age 75, both hemispheres 33.2
Nucleus of the diagonal band
nTPM: 34.2
1979 Male, age 74, unknown 36.6
1812 Female, age 91, both hemispheres 34.6
2775 Male, age 80, right hemisphere 34.1
2195 Female, age 85, both hemispheres 33.9
2029 Male, age 61, right hemisphere 31.7
Olfactory tubercle
nTPM: 32.5
1846 Male, age 80, right hemisphere 33.4
1998 Female, age 91, both hemispheres 32.6
2856 Male, age 75, right hemisphere 32.1
2487 Female, age 94, left hemisphere 32.0
Putamen
nTPM: 35.4
2482 Female, age 94, left hemisphere 37.6
1838 Male, age 80, right hemisphere 36.1
1937 Female, age 91, right hemisphere 36.1
1829 Male, age 74, unknown 35.3
2466 Female, age 79, unknown 34.9
2647 Male, age 75, left hemisphere 34.1
2489 Female, age 72, unknown 33.4
Septal nuclei
nTPM: 33.0
2199 Male, age 80, right hemisphere 33.8
2009 Female, age 91, both hemispheres 33.7
2031 Female, age 72, unknown 33.4
2059 Female, age 85, both hemispheres 33.0
1960 Male, age 74, unknown 32.8
2394 Male, age 61, left hemisphere 32.8
2629 Female, age 94, right hemisphere 31.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.6
Samples: 246

Max nTPM: 43.7
Min nTPM: 21.0
Std nTPM: 4.1
Median nTPM: 27.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 43.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 42.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 42.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 41.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 41.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 39.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 38.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 37.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 37.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 37.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 36.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.3
Samples: 246

Max nTPM: 54.3
Min nTPM: 20.0
Std nTPM: 5.1
Median nTPM: 30.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 54.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 54.1
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 51.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 48.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 46.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 45.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 42.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 42.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 42.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 41.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 41.7
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Brain - Putamen (basal ganglia)
Average nTPM: 30.2
Samples: 205

Max nTPM: 49.7
Min nTPM: 21.4
Std nTPM: 4.8
Median nTPM: 29.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 49.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 42.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 42.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 42.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 41.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 40.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 40.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 40.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 39.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 39.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 39.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.7
FF:10164-103B2 76 years, female 67.7
Globus pallidus
Scaled Tags Per Million: 56.1
FF:10175-103C4 60 years, female 58.4
FF:10161-103A8 76 years, female 53.8
Nucleus accumbens
Scaled Tags Per Million: 51.9
FF:10037-101F1 23-56 years, mixed 51.9
Putamen
Scaled Tags Per Million: 81.4
FF:10176-103C5 60 years, female 81.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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