MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:142.2 nTPM
HPA:142.2 nTPM
GTEx:147.7 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Mouse:178.1 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 142.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 136.2
2586 Male, age 75, left hemisphere 143.1
2828 Female, age 72, unknown 140.6
1827 Male, age 72, unknown 139.1
2411 Female, age 72, unknown 136.9
1833 Male, age 53, unknown 136.8
2666 Male, age 74, left hemisphere 136.0
1870 Female, age 42, unknown 134.6
1830 Male, age 51, unknown 132.6
2019 Male, age 18, unknown 132.0
2219 Male, age 76, both hemispheres 130.1
Dorsal raphe nucleus
nTPM: 138.2
2047 Male, age 72, unknown 143.1
2298 Female, age 72, unknown 141.6
1828 Male, age 53, unknown 138.2
2016 Female, age 72, unknown 134.5
2750 Male, age 76, both hemispheres 133.5
Inferior colliculus
nTPM: 142.2
1890 Male, age 53, unknown 145.4
2097 Female, age 72, unknown 144.5
1848 Female, age 42, unknown 140.4
2849 Male, age 72, unknown 138.5
Median raphe nucleus
nTPM: 134.7
2220 Male, age 76, midline 134.7
Pedunculopontine tegmental nucleus
nTPM: 136.0
2334 Male, age 80, both hemispheres 136.8
2338 Male, age 61, both hemispheres 136.6
1921 Female, age 85, both hemispheres 134.7
Periaquaductal grey, anterior
nTPM: 140.1
1947 Male, age 18, unknown 141.7
1795 Male, age 51, unknown 141.0
2502 Female, age 75, unknown 137.7
Periaquaductal grey, dorsal
nTPM: 138.8
2850 Male, age 76, both hemispheres 141.3
1831 Male, age 72, unknown 138.9
1840 Male, age 53, unknown 138.8
2464 Female, age 72, unknown 136.3
Periaquaductal grey, lateral
nTPM: 140.9
2272 Male, age 74, both hemispheres 145.0
2053 Male, age 18, unknown 141.9
2140 Male, age 76, both hemispheres 135.9
Pretectal area
nTPM: 140.0
1816 Male, age 51, unknown 147.5
1944 Female, age 72, unknown 146.9
1817 Female, age 42, unknown 144.2
2007 Male, age 72, unknown 141.4
2667 Female, age 75, unknown 140.3
1815 Male, age 53, unknown 139.7
2273 Male, age 74, both hemispheres 137.6
2224 Female, age 72, unknown 136.8
2316 Male, age 76, right hemisphere 135.5
2825 Male, age 18, unknown 135.4
2407 Male, age 75, both hemispheres 134.2
Red nucleus
nTPM: 137.1
1821 Female, age 72, unknown 141.2
2503 Female, age 72, unknown 140.6
2785 Male, age 18, unknown 138.1
1865 Male, age 51, unknown 137.7
2769 Male, age 72, unknown 137.3
2823 Male, age 76, right hemisphere 137.0
2227 Male, age 72, unknown 136.5
2588 Male, age 74, left hemisphere 136.2
1904 Male, age 53, unknown 135.8
2725 Female, age 75, unknown 135.8
2584 Male, age 75, left hemisphere 135.2
1954 Female, age 42, unknown 134.2
Substantia nigra
nTPM: 139.1
1916 Female, age 42, unknown 146.8
1889 Female, age 72, unknown 144.7
2699 Male, age 18, unknown 143.4
2665 Male, age 74, both hemispheres 142.3
1851 Male, age 51, unknown 141.8
2590 Female, age 75, unknown 140.3
2583 Male, age 75, right hemisphere 138.2
1941 Male, age 53, unknown 134.6
2241 Male, age 72, unknown 129.6
2409 Female, age 72, unknown 129.0
Superior colliculus
nTPM: 138.8
1995 Male, age 72, unknown 143.2
2587 Male, age 74, left hemisphere 141.3
2668 Female, age 75, unknown 140.3
1796 Male, age 53, unknown 139.7
2087 Female, age 72, unknown 139.7
2261 Male, age 18, unknown 139.6
1913 Female, age 42, unknown 138.1
2664 Male, age 75, both hemispheres 136.9
1839 Male, age 51, unknown 135.0
1895 Male, age 76, right hemisphere 134.5
Ventral tegmental area
nTPM: 138.9
1915 Female, age 42, unknown 142.3
2410 Female, age 72, unknown 140.8
2218 Male, age 76, both hemispheres 140.1
2021 Male, age 53, unknown 139.5
2223 Female, age 72, unknown 135.4
1942 Male, age 51, unknown 135.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 147.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 147.7
Samples: 139

Max nTPM: 276.4
Min nTPM: 73.7
Std nTPM: 36.2
Median nTPM: 142.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 276.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 270.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 249.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 230.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 226.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 210.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 208.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 203.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 203.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 197.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 196.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.0
FF:10158-103A5 76 years, female 65.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.1
Samples: 4

Max nTPM: 198.2
Min nTPM: 156.7
Sample A Male 198.2
Sample B Male 173.9
Sample C Female 156.7
Sample D Female 183.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
77910761 Antisense, RP_070208_04_F12, Mouse strain C57BL/6J (56 days, male) 2.6

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