MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.6 nTPM
HPA:12.6 nTPM
GTEx:12.3 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:5.4 nTPM
Allen mouse:23.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.9
2586 Male, age 75, left hemisphere 11.9
2666 Male, age 74, left hemisphere 11.5
2828 Female, age 72, unknown 11.5
1830 Male, age 51, unknown 10.8
1833 Male, age 53, unknown 9.8
2019 Male, age 18, unknown 9.7
2411 Female, age 72, unknown 9.0
1827 Male, age 72, unknown 8.7
1870 Female, age 42, unknown 8.1
2219 Male, age 76, both hemispheres 7.5
Dorsal raphe nucleus
nTPM: 10.2
2750 Male, age 76, both hemispheres 11.4
1828 Male, age 53, unknown 11.0
2016 Female, age 72, unknown 10.8
2047 Male, age 72, unknown 9.3
2298 Female, age 72, unknown 8.2
Inferior colliculus
nTPM: 8.2
1848 Female, age 42, unknown 9.0
2849 Male, age 72, unknown 8.7
1890 Male, age 53, unknown 8.2
2097 Female, age 72, unknown 7.1
Median raphe nucleus
nTPM: 10.8
2220 Male, age 76, midline 10.8
Pedunculopontine tegmental nucleus
nTPM: 12.6
2338 Male, age 61, both hemispheres 20.6
2334 Male, age 80, both hemispheres 10.5
1921 Female, age 85, both hemispheres 6.8
Periaquaductal grey, anterior
nTPM: 8.7
1795 Male, age 51, unknown 9.0
2502 Female, age 75, unknown 8.6
1947 Male, age 18, unknown 8.4
Periaquaductal grey, dorsal
nTPM: 10.5
1831 Male, age 72, unknown 12.7
2850 Male, age 76, both hemispheres 10.5
1840 Male, age 53, unknown 9.4
2464 Female, age 72, unknown 9.3
Periaquaductal grey, lateral
nTPM: 10.5
2272 Male, age 74, both hemispheres 11.0
2140 Male, age 76, both hemispheres 10.5
2053 Male, age 18, unknown 10.2
Pretectal area
nTPM: 9.4
2407 Male, age 75, both hemispheres 12.9
1817 Female, age 42, unknown 10.7
1815 Male, age 53, unknown 10.1
2825 Male, age 18, unknown 10.1
2316 Male, age 76, right hemisphere 9.9
2224 Female, age 72, unknown 9.0
2007 Male, age 72, unknown 8.6
1944 Female, age 72, unknown 8.5
2273 Male, age 74, both hemispheres 7.9
2667 Female, age 75, unknown 7.8
1816 Male, age 51, unknown 7.7
Red nucleus
nTPM: 10.1
2584 Male, age 75, left hemisphere 13.7
2823 Male, age 76, right hemisphere 10.8
1865 Male, age 51, unknown 10.5
2227 Male, age 72, unknown 10.4
2725 Female, age 75, unknown 10.3
2769 Male, age 72, unknown 10.1
1904 Male, age 53, unknown 9.6
2503 Female, age 72, unknown 9.5
2785 Male, age 18, unknown 9.4
1954 Female, age 42, unknown 9.3
1821 Female, age 72, unknown 8.6
2588 Male, age 74, left hemisphere 8.3
Substantia nigra
nTPM: 11.8
2699 Male, age 18, unknown 16.1
2665 Male, age 74, both hemispheres 15.5
2583 Male, age 75, right hemisphere 12.9
2590 Female, age 75, unknown 12.4
1916 Female, age 42, unknown 11.3
2409 Female, age 72, unknown 10.8
1851 Male, age 51, unknown 10.7
1941 Male, age 53, unknown 9.8
2241 Male, age 72, unknown 9.5
1889 Female, age 72, unknown 8.7
Superior colliculus
nTPM: 9.8
1913 Female, age 42, unknown 11.6
1995 Male, age 72, unknown 11.2
1839 Male, age 51, unknown 10.4
2668 Female, age 75, unknown 10.4
2587 Male, age 74, left hemisphere 10.3
2664 Male, age 75, both hemispheres 10.1
1796 Male, age 53, unknown 9.6
2087 Female, age 72, unknown 9.3
1895 Male, age 76, right hemisphere 7.6
2261 Male, age 18, unknown 7.3
Ventral tegmental area
nTPM: 10.6
2021 Male, age 53, unknown 11.9
2218 Male, age 76, both hemispheres 11.5
1915 Female, age 42, unknown 11.0
1942 Male, age 51, unknown 10.5
2223 Female, age 72, unknown 9.5
2410 Female, age 72, unknown 8.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 37.5
Min nTPM: 2.6
Std nTPM: 7.2
Median nTPM: 10.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 37.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 36.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 36.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 33.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 30.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 29.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 29.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 29.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 27.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 24.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.6
FF:10158-103A5 76 years, female 63.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 16.6
Min nTPM: 9.4
Sample A Female 16.6
Sample B Female 15.1
Sample C Male 10.3
Sample D Male 9.4
Periaqueductal gray
nTPM: 16.8
Samples: 3

Max nTPM: 21.9
Min nTPM: 14.2
Sample B Female 14.3
Sample C Male 21.9
Sample D Male 14.2
Substantia nigra
nTPM: 16.0
Samples: 4

Max nTPM: 17.3
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 17.3
Sample C Male 17.0
Sample D Male 15.2
Superior colliculi
nTPM: 12.2
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.7
Sample A Female 12.5
Sample B Female 11.5
Sample C Male 10.7
Sample D Male 14.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.2
Sample A Male 6.3
Sample B Male 5.1
Sample C Female 4.2
Sample D Female 6.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.8
69202370 Antisense, RP_050324_03_E06, Mouse strain C57BL/6J (56 days, male) 23.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.