BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA:24.5 nTPM
GTEx:31.2 nTPM
FANTOM5:90.2 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:91.1 nTPM
Allen mouse:5.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.1
1857 Female, age 85, left hemisphere 31.0
2846 Female, age 79, unknown 28.7
2290 Female, age 72, unknown 25.8
1854 Male, age 80, left hemisphere 22.4
2289 Male, age 61, right hemisphere 18.5
1781 Male, age 74, unknown 18.1
2288 Male, age 75, left hemisphere 13.6
2481 Female, age 94, left hemisphere 10.7
Claustrum
nTPM: 3.1
2196 Female, age 79, unknown 7.6
2568 Male, age 61, both hemispheres 4.5
2392 Female, age 94, both hemispheres 4.2
2198 Male, age 80, both hemispheres 3.4
2284 Female, age 91, both hemispheres 2.6
2491 Male, age 75, both hemispheres 2.2
2292 Female, age 85, both hemispheres 1.5
1956 Male, age 74, unknown 1.0
2645 Female, age 72, unknown 0.9
Globus pallidus, externus
nTPM: 0.7
2646 Male, age 61, right hemisphere 1.9
2395 Male, age 75, both hemispheres 1.3
2567 Female, age 72, unknown 0.3
1996 Male, age 80, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.9
2483 Female, age 94, right hemisphere 6.0
2287 Male, age 75, right hemisphere 0.3
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 21.5
1783 Male, age 74, unknown 33.3
1856 Female, age 91, right hemisphere 32.4
1806 Female, age 85, left hemisphere 30.7
2824 Male, age 61, right hemisphere 30.5
2698 Female, age 72, unknown 20.4
2286 Male, age 75, left hemisphere 10.7
2391 Female, age 94, left hemisphere 7.3
2732 Male, age 80, right hemisphere 6.9
Nucleus basalis of Meynert
nTPM: 13.3
2484 Female, age 94, left hemisphere 24.8
2393 Male, age 80, right hemisphere 18.3
2821 Male, age 75, both hemispheres 6.6
2569 Male, age 61, both hemispheres 3.5
Nucleus of the diagonal band
nTPM: 4.0
2195 Female, age 85, both hemispheres 6.0
1812 Female, age 91, both hemispheres 4.6
2775 Male, age 80, right hemisphere 3.9
2029 Male, age 61, right hemisphere 3.7
1979 Male, age 74, unknown 1.8
Olfactory tubercle
nTPM: 2.5
1846 Male, age 80, right hemisphere 3.5
2487 Female, age 94, left hemisphere 2.5
1998 Female, age 91, both hemispheres 2.1
2856 Male, age 75, right hemisphere 1.7
Putamen
nTPM: 24.5
2466 Female, age 79, unknown 38.4
1838 Male, age 80, right hemisphere 31.6
1829 Male, age 74, unknown 29.2
1937 Female, age 91, right hemisphere 25.9
2489 Female, age 72, unknown 24.5
2482 Female, age 94, left hemisphere 13.0
2647 Male, age 75, left hemisphere 8.7
Septal nuclei
nTPM: 2.4
1960 Male, age 74, unknown 4.6
2059 Female, age 85, both hemispheres 3.2
2031 Female, age 72, unknown 2.4
2009 Female, age 91, both hemispheres 2.3
2629 Female, age 94, right hemisphere 2.2
2394 Male, age 61, left hemisphere 2.0
2199 Male, age 80, right hemisphere 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.7
Samples: 246

Max nTPM: 75.6
Min nTPM: 0.1
Std nTPM: 15.3
Median nTPM: 16.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 75.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 61.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 58.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 58.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 56.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 56.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 56.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 54.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 52.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 50.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 50.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.2
Samples: 246

Max nTPM: 83.6
Min nTPM: 0.0
Std nTPM: 20.5
Median nTPM: 31.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 83.6
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 80.4
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 79.2
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 76.8
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 76.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 72.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 71.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 69.7
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 69.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 67.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 67.5
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Brain - Putamen (basal ganglia)
Average nTPM: 23.1
Samples: 205

Max nTPM: 87.0
Min nTPM: 0.4
Std nTPM: 18.5
Median nTPM: 20.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 87.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 78.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 75.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 74.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 73.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 61.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 61.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 58.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 58.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 56.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 56.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.8
FF:10164-103B2 76 years, female 56.8
Globus pallidus
Scaled Tags Per Million: 16.5
FF:10175-103C4 60 years, female 29.2
FF:10161-103A8 76 years, female 3.7
Nucleus accumbens
Scaled Tags Per Million: 32.0
FF:10037-101F1 23-56 years, mixed 32.0
Putamen
Scaled Tags Per Million: 90.2
FF:10176-103C5 60 years, female 90.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.7
Pig sample Sample description nTPM
Caudate
nTPM: 29.7
Samples: 4

Max nTPM: 40.1
Min nTPM: 18.1
Sample A Female 18.1
Sample B Female 25.4
Sample C Male 40.1
Sample D Male 35.1
Putamen
nTPM: 23.2
Samples: 4

Max nTPM: 34.3
Min nTPM: 4.8
Sample A Female 4.8
Sample B Female 21.1
Sample C Male 32.6
Sample D Male 34.3
Septum
nTPM: 7.8
Samples: 4

Max nTPM: 14.4
Min nTPM: 2.3
Sample A Female 11.4
Sample B Female 14.4
Sample C Male 3.2
Sample D Male 2.3
Ventral pallidum
nTPM: 11.9
Samples: 4

Max nTPM: 21.6
Min nTPM: 1.8
Sample A Female 21.6
Sample B Female 7.9
Sample C Male 1.8
Sample D Male 16.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 91.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 91.1
Samples: 4

Max nTPM: 115.1
Min nTPM: 73.0
Sample A Male 96.6
Sample B Male 115.1
Sample C Female 73.0
Sample D Female 79.6
Septum
nTPM: 9.2
Samples: 4

Max nTPM: 12.7
Min nTPM: 4.7
Sample A Male 12.7
Sample B Male 4.7
Sample C Female 8.3
Sample D Female 11.0
Ventral forebrain
nTPM: 41.9
Samples: 4

Max nTPM: 57.5
Min nTPM: 33.4
Sample A Male 38.0
Sample B Male 33.4
Sample C Female 57.5
Sample D Female 38.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.2
71247615 Antisense, RP_050331_02_H09, Mouse strain C57BL/6J (56 days, male) 5.2
69257600 Antisense, RP_050331_02_H09, Mouse strain C57BL/6J (56 days, male) 4.7
Pallidum
Expression energy: 2.8
71247615 Antisense, RP_050331_02_H09, Mouse strain C57BL/6J (56 days, male) 2.8
69257600 Antisense, RP_050331_02_H09, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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