BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2.5 nTPM
HPA:2.5 nTPM
GTEx:1.5 nTPM
FANTOM5:10.6 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:4.0 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA029598
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 2.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.8
2290 Female, age 72, unknown 2.5
2481 Female, age 94, left hemisphere 2.4
1854 Male, age 80, left hemisphere 2.3
1857 Female, age 85, left hemisphere 2.1
2288 Male, age 75, left hemisphere 1.7
2289 Male, age 61, right hemisphere 1.3
2846 Female, age 79, unknown 1.1
1781 Male, age 74, unknown 0.6
Claustrum
nTPM: 1.7
2196 Female, age 79, unknown 3.3
2392 Female, age 94, both hemispheres 2.5
1956 Male, age 74, unknown 2.2
2292 Female, age 85, both hemispheres 2.1
2645 Female, age 72, unknown 1.5
2284 Female, age 91, both hemispheres 1.4
2491 Male, age 75, both hemispheres 1.0
2568 Male, age 61, both hemispheres 0.9
2198 Male, age 80, both hemispheres 0.8
Globus pallidus, externus
nTPM: 2.4
2646 Male, age 61, right hemisphere 3.3
2395 Male, age 75, both hemispheres 2.8
2567 Female, age 72, unknown 2.1
2772 Female, age 79, unknown 2.0
1996 Male, age 80, right hemisphere 1.9
Globus pallidus, internus
nTPM: 2.5
2778 Female, age 91, both hemispheres 3.5
2111 Female, age 85, right hemisphere 2.8
2287 Male, age 75, right hemisphere 2.8
2566 Female, age 72, unknown 2.6
2037 Male, age 80, right hemisphere 2.0
2483 Female, age 94, right hemisphere 2.0
1818 Male, age 74, unknown 1.8
Nucleus accumbens
nTPM: 2.4
2698 Female, age 72, unknown 3.9
2824 Male, age 61, right hemisphere 3.0
2391 Female, age 94, left hemisphere 2.8
1856 Female, age 91, right hemisphere 2.5
1783 Male, age 74, unknown 2.2
1806 Female, age 85, left hemisphere 2.1
2732 Male, age 80, right hemisphere 2.1
2286 Male, age 75, left hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 2.5
2569 Male, age 61, both hemispheres 3.2
2393 Male, age 80, right hemisphere 2.7
2484 Female, age 94, left hemisphere 2.5
2821 Male, age 75, both hemispheres 1.5
Nucleus of the diagonal band
nTPM: 0.8
1979 Male, age 74, unknown 2.0
2195 Female, age 85, both hemispheres 1.2
1812 Female, age 91, both hemispheres 0.6
2775 Male, age 80, right hemisphere 0.4
2029 Male, age 61, right hemisphere 0.0
Olfactory tubercle
nTPM: 1.0
1846 Male, age 80, right hemisphere 1.5
2487 Female, age 94, left hemisphere 1.3
2856 Male, age 75, right hemisphere 1.3
1998 Female, age 91, both hemispheres 0.0
Putamen
nTPM: 2.2
1829 Male, age 74, unknown 3.2
2647 Male, age 75, left hemisphere 3.0
1838 Male, age 80, right hemisphere 2.5
2482 Female, age 94, left hemisphere 2.2
1937 Female, age 91, right hemisphere 2.0
2489 Female, age 72, unknown 1.8
2466 Female, age 79, unknown 0.9
Septal nuclei
nTPM: 1.1
2199 Male, age 80, right hemisphere 2.7
2394 Male, age 61, left hemisphere 1.3
2009 Female, age 91, both hemispheres 1.1
2629 Female, age 94, right hemisphere 1.0
2059 Female, age 85, both hemispheres 0.8
2031 Female, age 72, unknown 0.5
1960 Male, age 74, unknown 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.2
Samples: 246

Max nTPM: 3.3
Min nTPM: 0.1
Std nTPM: 0.5
Median nTPM: 1.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 3.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 3.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 3.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 3.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 2.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 2.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 2.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 2.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.5
Samples: 246

Max nTPM: 4.9
Min nTPM: 0.1
Std nTPM: 0.8
Median nTPM: 1.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 4.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 4.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 4.6
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 3.7
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 3.7
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 3.3
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 3.2
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 3.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 3.0
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 3.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 2.9
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Brain - Putamen (basal ganglia)
Average nTPM: 1.2
Samples: 205

Max nTPM: 4.2
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 1.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 3.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 2.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 2.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 2.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 2.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 2.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 2.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 2.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 2.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.3
FF:10164-103B2 76 years, female 7.3
Globus pallidus
Scaled Tags Per Million: 10.6
FF:10161-103A8 76 years, female 11.9
FF:10175-103C4 60 years, female 9.4
Nucleus accumbens
Scaled Tags Per Million: 6.3
FF:10037-101F1 23-56 years, mixed 6.3
Putamen
Scaled Tags Per Million: 6.1
FF:10176-103C5 60 years, female 6.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Caudate
nTPM: 8.5
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.9
Sample A Female 8.9
Sample B Female 8.1
Sample C Male 7.9
Sample D Male 9.1
Putamen
nTPM: 7.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.7
Sample A Female 7.9
Sample B Female 6.7
Sample C Male 8.7
Sample D Male 7.1
Septum
nTPM: 8.4
Samples: 4

Max nTPM: 8.7
Min nTPM: 8.1
Sample A Female 8.7
Sample B Female 8.1
Sample C Male 8.4
Sample D Male 8.3
Ventral pallidum
nTPM: 8.3
Samples: 4

Max nTPM: 9.9
Min nTPM: 6.7
Sample A Female 9.9
Sample B Female 6.7
Sample C Male 9.1
Sample D Male 7.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.9
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.3
Sample A Male 2.6
Sample B Male 2.3
Sample C Female 3.3
Sample D Female 3.3
Septum
nTPM: 3.5
Samples: 4

Max nTPM: 3.8
Min nTPM: 3.2
Sample A Male 3.8
Sample B Male 3.2
Sample C Female 3.4
Sample D Female 3.7
Ventral forebrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.6
Sample A Male 4.0
Sample B Male 4.1
Sample C Female 3.6
Sample D Female 4.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
70595768 Antisense, RP_050628_03_A06, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.5
70595768 Antisense, RP_050628_03_A06, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

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