HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.7 nTPM
HPA:64.7 nTPM
GTEx:57.4 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:17.9 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.7
Sample id Sample description nTPM
Hippocampus
nTPM: 64.4
1898 Male, age 80, left hemisphere 66.0
2529 Female, age 94, left hemisphere 65.5
1855 Male, age 76, left hemisphere 64.3
1911 Female, age 85, right hemisphere 64.1
2148 Female, age 91, left hemisphere 64.1
2621 Female, age 67, right hemisphere 62.5
Dentate gyrus
nTPM: 63.7
2010 Male, age 76, both hemispheres 65.7
2528 Male, age 74, both hemispheres 65.4
2530 Female, age 94, left hemisphere 63.8
2246 Female, age 85, both hemispheres 62.8
1927 Female, age 91, both hemispheres 62.3
2531 Female, age 67, both hemispheres 62.0
Entorhinal gyrus
nTPM: 62.3
2117 Female, age 91, right hemisphere 66.1
2686 Male, age 75, right hemisphere 62.9
1938 Female, age 85, left hemisphere 62.2
1787 Male, age 76, left hemisphere 61.7
2764 Male, age 80, right hemisphere 61.2
2613 Female, age 94, left hemisphere 59.5
Hippocampus, CA1
nTPM: 63.7
2082 Female, age 91, right hemisphere 65.3
1873 Female, age 85, both hemispheres 64.7
2527 Male, age 74, both hemispheres 64.0
2045 Male, age 76, both hemispheres 63.9
2749 Male, age 80, left hemisphere 60.7
Hippocampus, CA2
nTPM: 64.7
2249 Male, age 74, both hemispheres 69.6
1940 Female, age 85, left hemisphere 65.8
2113 Female, age 91, right hemisphere 64.1
1963 Male, age 80, left hemisphere 63.1
2437 Female, age 94, left hemisphere 62.7
1892 Male, age 76, both hemispheres 62.6
Hippocampus, CA3
nTPM: 63.9
2436 Male, age 74, both hemispheres 69.7
1867 Male, age 76, both hemispheres 64.1
1891 Female, age 85, both hemispheres 63.9
2137 Male, age 80, left hemisphere 62.3
2620 Female, age 94, left hemisphere 61.9
2861 Female, age 67, both hemispheres 61.7
Parahippocampal cortex
nTPM: 61.9
2018 Male, age 76, both hemispheres 65.3
2250 Female, age 67, right hemisphere 63.1
1933 Female, age 85, both hemispheres 62.9
1850 Male, age 80, both hemispheres 62.2
1990 Female, age 91, right hemisphere 62.1
2245 Female, age 91, both hemispheres 61.6
2693 Female, age 94, both hemispheres 61.0
2622 Female, age 67, right hemisphere 60.3
2532 Female, age 72, left hemisphere 60.2
2692 Male, age 74, both hemispheres 60.1
Perirhinal gyrus
nTPM: 61.5
2521 Female, age 94, right hemisphere 62.2
1847 Female, age 91, left hemisphere 62.1
1841 Female, age 85, right hemisphere 61.3
2848 Male, age 76, right hemisphere 61.1
1794 Male, age 80, right hemisphere 60.7
Subiculum
nTPM: 63.5
2042 Male, age 76, both hemispheres 65.4
2729 Female, age 91, right hemisphere 65.4
2619 Male, age 74, both hemispheres 63.5
1901 Male, age 80, both hemispheres 63.0
1977 Female, age 85, both hemispheres 62.9
2438 Female, age 94, left hemisphere 61.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 57.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 57.4
Samples: 197

Max nTPM: 189.4
Min nTPM: 25.8
Std nTPM: 20.0
Median nTPM: 54.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 189.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 123.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 114.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 114.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 102.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 100.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 98.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 93.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 93.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 92.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 92.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.1
FF:10153-102I9 76 years, female 19.4
FF:10169-103B7 60 years, female 18.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 22.3
Sample A Female 39.9
Sample B Female 23.3
Sample C Male 35.6
Sample D Male 22.3
Entorhinal cortex
nTPM: 23.4
Samples: 4

Max nTPM: 31.3
Min nTPM: 17.0
Sample A Female 21.9
Sample B Female 23.5
Sample C Male 31.3
Sample D Male 17.0
Subiculum
nTPM: 29.0
Samples: 4

Max nTPM: 36.2
Min nTPM: 25.7
Sample A Female 36.2
Sample B Female 27.7
Sample C Male 25.7
Sample D Male 26.3
Ventral hippocampus
nTPM: 29.4
Samples: 4

Max nTPM: 36.9
Min nTPM: 23.1
Sample A Female 29.2
Sample B Female 23.1
Sample C Male 36.9
Sample D Male 28.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.5
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.6
Sample A Male 2.2
Sample B Male 1.6
Sample C Female 3.1
Sample D Female 3.2
Hippocampal formation
nTPM: 2.0
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.7
Sample A Male 2.4
Sample B Male 1.7
Sample C Female 1.7
Sample D Female 2.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 1.6
Hippocampal formation
Expression energy: 1.6
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.