MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:72.2 nTPM
HPA:72.2 nTPM
GTEx:64.2 nTPM
FANTOM5:26.8 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:18.6 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.2
1870 Female, age 42, unknown 68.2
1830 Male, age 51, unknown 65.4
2411 Female, age 72, unknown 65.1
1833 Male, age 53, unknown 64.8
2828 Female, age 72, unknown 64.6
1827 Male, age 72, unknown 64.2
2019 Male, age 18, unknown 63.6
2666 Male, age 74, left hemisphere 63.5
2586 Male, age 75, left hemisphere 62.5
2219 Male, age 76, both hemispheres 60.5
Dorsal raphe nucleus
nTPM: 68.5
2016 Female, age 72, unknown 72.2
2298 Female, age 72, unknown 71.0
1828 Male, age 53, unknown 69.3
2047 Male, age 72, unknown 65.3
2750 Male, age 76, both hemispheres 64.8
Inferior colliculus
nTPM: 64.4
2097 Female, age 72, unknown 65.6
1848 Female, age 42, unknown 64.4
1890 Male, age 53, unknown 64.3
2849 Male, age 72, unknown 63.4
Median raphe nucleus
nTPM: 65.0
2220 Male, age 76, midline 65.0
Pedunculopontine tegmental nucleus
nTPM: 65.5
2338 Male, age 61, both hemispheres 66.7
2334 Male, age 80, both hemispheres 65.7
1921 Female, age 85, both hemispheres 64.3
Periaquaductal grey, anterior
nTPM: 66.2
2502 Female, age 75, unknown 66.7
1795 Male, age 51, unknown 66.1
1947 Male, age 18, unknown 65.9
Periaquaductal grey, dorsal
nTPM: 69.4
2850 Male, age 76, both hemispheres 76.7
1840 Male, age 53, unknown 68.7
1831 Male, age 72, unknown 66.6
2464 Female, age 72, unknown 65.6
Periaquaductal grey, lateral
nTPM: 72.2
2272 Male, age 74, both hemispheres 76.0
2140 Male, age 76, both hemispheres 72.6
2053 Male, age 18, unknown 68.0
Pretectal area
nTPM: 65.3
2273 Male, age 74, both hemispheres 75.1
2224 Female, age 72, unknown 69.6
2316 Male, age 76, right hemisphere 66.7
2825 Male, age 18, unknown 65.6
1815 Male, age 53, unknown 64.4
1817 Female, age 42, unknown 64.1
2667 Female, age 75, unknown 63.9
2407 Male, age 75, both hemispheres 63.5
1944 Female, age 72, unknown 62.0
2007 Male, age 72, unknown 62.0
1816 Male, age 51, unknown 61.5
Red nucleus
nTPM: 66.2
1821 Female, age 72, unknown 69.2
2227 Male, age 72, unknown 69.1
1865 Male, age 51, unknown 68.4
2769 Male, age 72, unknown 67.3
2785 Male, age 18, unknown 67.3
1954 Female, age 42, unknown 66.9
1904 Male, age 53, unknown 66.2
2823 Male, age 76, right hemisphere 65.9
2725 Female, age 75, unknown 65.6
2503 Female, age 72, unknown 65.5
2588 Male, age 74, left hemisphere 61.9
2584 Male, age 75, left hemisphere 61.3
Substantia nigra
nTPM: 64.0
2699 Male, age 18, unknown 67.3
2590 Female, age 75, unknown 65.5
1851 Male, age 51, unknown 65.4
2241 Male, age 72, unknown 64.2
1916 Female, age 42, unknown 63.9
2665 Male, age 74, both hemispheres 63.5
1941 Male, age 53, unknown 63.2
1889 Female, age 72, unknown 63.1
2583 Male, age 75, right hemisphere 63.0
2409 Female, age 72, unknown 61.1
Superior colliculus
nTPM: 65.4
1995 Male, age 72, unknown 70.9
1913 Female, age 42, unknown 68.5
2587 Male, age 74, left hemisphere 68.5
1839 Male, age 51, unknown 65.0
2668 Female, age 75, unknown 64.4
2664 Male, age 75, both hemispheres 63.9
2261 Male, age 18, unknown 63.7
1895 Male, age 76, right hemisphere 63.5
1796 Male, age 53, unknown 63.3
2087 Female, age 72, unknown 62.4
Ventral tegmental area
nTPM: 64.9
2021 Male, age 53, unknown 66.5
2223 Female, age 72, unknown 65.8
1915 Female, age 42, unknown 64.5
2410 Female, age 72, unknown 64.3
2218 Male, age 76, both hemispheres 64.2
1942 Male, age 51, unknown 64.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.2
Samples: 139

Max nTPM: 120.4
Min nTPM: 23.7
Std nTPM: 19.3
Median nTPM: 62.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 120.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 115.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 110.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 109.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 105.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 105.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 102.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 98.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 97.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 97.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 97.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.8
FF:10158-103A5 76 years, female 26.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.8
Pig sample Sample description nTPM
Midbrain
nTPM: 41.8
Samples: 4

Max nTPM: 74.6
Min nTPM: 24.4
Sample A Female 74.6
Sample B Female 38.1
Sample C Male 30.1
Sample D Male 24.4
Periaqueductal gray
nTPM: 41.7
Samples: 3

Max nTPM: 46.5
Min nTPM: 35.3
Sample B Female 35.3
Sample C Male 46.5
Sample D Male 43.2
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 45.7
Min nTPM: 35.1
Sample A Female 45.7
Sample B Female 35.1
Sample C Male 36.8
Sample D Male 41.8
Superior colliculi
nTPM: 35.7
Samples: 4

Max nTPM: 38.3
Min nTPM: 33.3
Sample A Female 38.3
Sample B Female 34.0
Sample C Male 33.3
Sample D Male 37.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.7
Sample A Male 2.6
Sample B Male 1.9
Sample C Female 1.9
Sample D Female 1.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 2.1
Midbrain
Expression energy: 2.1
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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