MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:66.2 nTPM
HPA:66.2 nTPM
GTEx:93.2 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:15.6 nTPM
Mouse:3.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.4
2586 Male, age 75, left hemisphere 87.3
2019 Male, age 18, unknown 66.7
2828 Female, age 72, unknown 66.4
1827 Male, age 72, unknown 65.6
1870 Female, age 42, unknown 63.8
2411 Female, age 72, unknown 62.5
1830 Male, age 51, unknown 61.9
1833 Male, age 53, unknown 61.7
2666 Male, age 74, left hemisphere 60.6
2219 Male, age 76, both hemispheres 57.7
Dorsal raphe nucleus
nTPM: 60.9
1828 Male, age 53, unknown 61.9
2016 Female, age 72, unknown 61.8
2047 Male, age 72, unknown 61.1
2298 Female, age 72, unknown 60.0
2750 Male, age 76, both hemispheres 59.5
Inferior colliculus
nTPM: 63.9
2849 Male, age 72, unknown 67.8
1848 Female, age 42, unknown 64.5
1890 Male, age 53, unknown 64.3
2097 Female, age 72, unknown 59.1
Median raphe nucleus
nTPM: 60.2
2220 Male, age 76, midline 60.2
Pedunculopontine tegmental nucleus
nTPM: 61.9
2338 Male, age 61, both hemispheres 64.6
2334 Male, age 80, both hemispheres 61.1
1921 Female, age 85, both hemispheres 59.9
Periaquaductal grey, anterior
nTPM: 65.3
2502 Female, age 75, unknown 68.6
1795 Male, age 51, unknown 66.6
1947 Male, age 18, unknown 60.9
Periaquaductal grey, dorsal
nTPM: 64.9
1840 Male, age 53, unknown 68.6
1831 Male, age 72, unknown 65.4
2464 Female, age 72, unknown 63.0
2850 Male, age 76, both hemispheres 62.7
Periaquaductal grey, lateral
nTPM: 61.2
2140 Male, age 76, both hemispheres 64.0
2053 Male, age 18, unknown 62.9
2272 Male, age 74, both hemispheres 56.7
Pretectal area
nTPM: 63.7
2007 Male, age 72, unknown 69.8
1816 Male, age 51, unknown 68.2
2407 Male, age 75, both hemispheres 65.9
1817 Female, age 42, unknown 65.5
2825 Male, age 18, unknown 64.3
2316 Male, age 76, right hemisphere 63.8
1815 Male, age 53, unknown 63.4
1944 Female, age 72, unknown 63.1
2667 Female, age 75, unknown 59.5
2224 Female, age 72, unknown 58.8
2273 Male, age 74, both hemispheres 58.6
Red nucleus
nTPM: 65.7
2584 Male, age 75, left hemisphere 72.5
2588 Male, age 74, left hemisphere 69.3
2503 Female, age 72, unknown 66.5
2769 Male, age 72, unknown 66.1
2785 Male, age 18, unknown 66.1
2227 Male, age 72, unknown 66.0
1904 Male, age 53, unknown 65.1
2823 Male, age 76, right hemisphere 64.5
1954 Female, age 42, unknown 64.2
1865 Male, age 51, unknown 62.9
2725 Female, age 75, unknown 62.9
1821 Female, age 72, unknown 62.1
Substantia nigra
nTPM: 62.3
2583 Male, age 75, right hemisphere 69.9
2590 Female, age 75, unknown 67.2
2665 Male, age 74, both hemispheres 66.3
1889 Female, age 72, unknown 62.7
2699 Male, age 18, unknown 61.1
1851 Male, age 51, unknown 60.6
1916 Female, age 42, unknown 60.6
2409 Female, age 72, unknown 60.6
1941 Male, age 53, unknown 60.1
2241 Male, age 72, unknown 54.1
Superior colliculus
nTPM: 66.2
2664 Male, age 75, both hemispheres 85.8
1796 Male, age 53, unknown 66.9
1839 Male, age 51, unknown 66.3
2261 Male, age 18, unknown 65.6
2668 Female, age 75, unknown 64.3
2087 Female, age 72, unknown 64.0
1995 Male, age 72, unknown 63.4
1913 Female, age 42, unknown 62.6
1895 Male, age 76, right hemisphere 61.5
2587 Male, age 74, left hemisphere 61.2
Ventral tegmental area
nTPM: 61.4
1915 Female, age 42, unknown 64.7
2223 Female, age 72, unknown 62.3
1942 Male, age 51, unknown 61.9
2021 Male, age 53, unknown 60.6
2410 Female, age 72, unknown 60.3
2218 Male, age 76, both hemispheres 58.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.2
Samples: 139

Max nTPM: 313.2
Min nTPM: 33.5
Std nTPM: 41.8
Median nTPM: 84.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 313.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 254.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 210.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 203.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 191.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 182.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 182.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 173.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 162.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 162.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 155.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.6
FF:10158-103A5 76 years, female 35.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.6
Pig sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 17.7
Min nTPM: 11.4
Sample A Female 17.7
Sample B Female 15.2
Sample C Male 14.3
Sample D Male 11.4
Periaqueductal gray
nTPM: 12.2
Samples: 3

Max nTPM: 15.1
Min nTPM: 9.6
Sample B Female 11.8
Sample C Male 15.1
Sample D Male 9.6
Substantia nigra
nTPM: 14.4
Samples: 4

Max nTPM: 20.2
Min nTPM: 9.4
Sample A Female 20.2
Sample B Female 14.7
Sample C Male 13.3
Sample D Male 9.4
Superior colliculi
nTPM: 15.6
Samples: 4

Max nTPM: 18.8
Min nTPM: 12.2
Sample A Female 18.8
Sample B Female 16.0
Sample C Male 15.2
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.3
Sample A Male 4.3
Sample B Male 3.2
Sample C Female 2.3
Sample D Female 2.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71656695 Antisense, RP_050927_04_B03, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.