BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA:20.2 nTPM
GTEx:8.1 nTPM
FANTOM5:7.9 Scaled Tags Per Million
Mouse:9.5 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 20.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.3
1781 Male, age 74, unknown 14.0
2846 Female, age 79, unknown 12.3
2481 Female, age 94, left hemisphere 11.7
2290 Female, age 72, unknown 10.8
1854 Male, age 80, left hemisphere 10.7
2288 Male, age 75, left hemisphere 10.7
2289 Male, age 61, right hemisphere 10.1
1857 Female, age 85, left hemisphere 9.9
Claustrum
nTPM: 12.0
2392 Female, age 94, both hemispheres 13.1
2568 Male, age 61, both hemispheres 12.6
2645 Female, age 72, unknown 12.2
2491 Male, age 75, both hemispheres 12.0
2196 Female, age 79, unknown 11.9
1956 Male, age 74, unknown 11.8
2292 Female, age 85, both hemispheres 11.7
2284 Female, age 91, both hemispheres 11.4
2198 Male, age 80, both hemispheres 11.2
Globus pallidus, externus
nTPM: 11.3
1996 Male, age 80, right hemisphere 12.1
2395 Male, age 75, both hemispheres 12.0
2772 Female, age 79, unknown 11.3
2646 Male, age 61, right hemisphere 10.8
2567 Female, age 72, unknown 10.5
Globus pallidus, internus
nTPM: 12.2
2778 Female, age 91, both hemispheres 14.2
2287 Male, age 75, right hemisphere 14.0
2111 Female, age 85, right hemisphere 12.8
2037 Male, age 80, right hemisphere 11.7
1818 Male, age 74, unknown 11.2
2483 Female, age 94, right hemisphere 11.1
2566 Female, age 72, unknown 10.2
Nucleus accumbens
nTPM: 10.6
2732 Male, age 80, right hemisphere 11.2
2286 Male, age 75, left hemisphere 10.9
2824 Male, age 61, right hemisphere 10.7
1783 Male, age 74, unknown 10.5
1806 Female, age 85, left hemisphere 10.5
2391 Female, age 94, left hemisphere 10.5
2698 Female, age 72, unknown 10.3
1856 Female, age 91, right hemisphere 10.2
Nucleus basalis of Meynert
nTPM: 20.2
2821 Male, age 75, both hemispheres 41.7
2484 Female, age 94, left hemisphere 16.4
2393 Male, age 80, right hemisphere 11.3
2569 Male, age 61, both hemispheres 11.3
Nucleus of the diagonal band
nTPM: 16.0
2195 Female, age 85, both hemispheres 20.5
2029 Male, age 61, right hemisphere 18.6
2775 Male, age 80, right hemisphere 18.1
1979 Male, age 74, unknown 11.8
1812 Female, age 91, both hemispheres 11.1
Olfactory tubercle
nTPM: 14.1
1846 Male, age 80, right hemisphere 16.8
2487 Female, age 94, left hemisphere 15.8
2856 Male, age 75, right hemisphere 12.1
1998 Female, age 91, both hemispheres 11.6
Putamen
nTPM: 11.3
2482 Female, age 94, left hemisphere 12.5
2647 Male, age 75, left hemisphere 12.1
2489 Female, age 72, unknown 11.2
2466 Female, age 79, unknown 11.0
1829 Male, age 74, unknown 10.8
1937 Female, age 91, right hemisphere 10.7
1838 Male, age 80, right hemisphere 10.6
Septal nuclei
nTPM: 15.8
1960 Male, age 74, unknown 23.0
2059 Female, age 85, both hemispheres 18.5
2031 Female, age 72, unknown 16.5
2394 Male, age 61, left hemisphere 14.4
2629 Female, age 94, right hemisphere 13.5
2199 Male, age 80, right hemisphere 13.2
2009 Female, age 91, both hemispheres 11.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.1
Samples: 246

Max nTPM: 257.4
Min nTPM: 0.4
Std nTPM: 19.7
Median nTPM: 2.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 257.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 96.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 77.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 54.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 52.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 51.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 49.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 47.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 38.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 37.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 34.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.8
Samples: 246

Max nTPM: 81.0
Min nTPM: 0.3
Std nTPM: 9.2
Median nTPM: 2.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 81.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 77.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 35.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 32.6
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 32.3
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 30.7
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 30.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 25.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 24.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 22.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 21.5
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Brain - Putamen (basal ganglia)
Average nTPM: 7.2
Samples: 205

Max nTPM: 63.2
Min nTPM: 0.5
Std nTPM: 11.4
Median nTPM: 2.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 63.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 63.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 62.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 57.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 49.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 42.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 41.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 41.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 37.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 34.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 32.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.9
FF:10164-103B2 76 years, female 7.9
Globus pallidus
Scaled Tags Per Million: 7.0
FF:10161-103A8 76 years, female 11.7
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 3.4
FF:10037-101F1 23-56 years, mixed 3.4
Putamen
Scaled Tags Per Million: 0.6
FF:10176-103C5 60 years, female 0.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.2
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.5
Sample A Male 6.1
Sample B Male 5.5
Sample C Female 9.2
Sample D Female 8.0
Septum
nTPM: 9.3
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.4
Sample A Male 9.7
Sample B Male 8.9
Sample C Female 10.0
Sample D Female 8.4
Ventral forebrain
nTPM: 9.5
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 8.4
Sample C Female 12.2
Sample D Female 9.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
79912577 Antisense, RP_071204_04_E04, Mouse strain C57BL/6J (56 days, male) 0.1
74272920 Antisense, RP_050921_03_C05, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
79912577 Antisense, RP_071204_04_E04, Mouse strain C57BL/6J (56 days, male) 0.1
74272920 Antisense, RP_050921_03_C05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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