MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.4 nTPM
HPA:61.4 nTPM
GTEx:70.1 nTPM
FANTOM5:148.9 Scaled Tags Per Million
Pig:180.0 nTPM
Mouse:320.7 nTPM
Allen mouse:19.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.8
2019 Male, age 18, unknown 59.4
2586 Male, age 75, left hemisphere 59.0
1827 Male, age 72, unknown 57.5
2411 Female, age 72, unknown 56.2
2219 Male, age 76, both hemispheres 55.8
1870 Female, age 42, unknown 53.0
2828 Female, age 72, unknown 52.7
1833 Male, age 53, unknown 52.6
2666 Male, age 74, left hemisphere 51.7
1830 Male, age 51, unknown 49.7
Dorsal raphe nucleus
nTPM: 55.3
2298 Female, age 72, unknown 61.4
1828 Male, age 53, unknown 59.1
2047 Male, age 72, unknown 56.4
2750 Male, age 76, both hemispheres 53.4
2016 Female, age 72, unknown 46.3
Inferior colliculus
nTPM: 53.7
2097 Female, age 72, unknown 56.8
1848 Female, age 42, unknown 54.6
1890 Male, age 53, unknown 51.7
2849 Male, age 72, unknown 51.7
Median raphe nucleus
nTPM: 55.1
2220 Male, age 76, midline 55.1
Pedunculopontine tegmental nucleus
nTPM: 56.5
1921 Female, age 85, both hemispheres 59.9
2334 Male, age 80, both hemispheres 58.3
2338 Male, age 61, both hemispheres 51.3
Periaquaductal grey, anterior
nTPM: 55.4
1947 Male, age 18, unknown 56.9
1795 Male, age 51, unknown 56.6
2502 Female, age 75, unknown 52.6
Periaquaductal grey, dorsal
nTPM: 50.2
1840 Male, age 53, unknown 52.8
2850 Male, age 76, both hemispheres 49.9
1831 Male, age 72, unknown 49.7
2464 Female, age 72, unknown 48.4
Periaquaductal grey, lateral
nTPM: 50.2
2272 Male, age 74, both hemispheres 53.7
2053 Male, age 18, unknown 49.4
2140 Male, age 76, both hemispheres 47.5
Pretectal area
nTPM: 58.1
2007 Male, age 72, unknown 67.2
1817 Female, age 42, unknown 65.6
1816 Male, age 51, unknown 65.4
2667 Female, age 75, unknown 64.7
1944 Female, age 72, unknown 63.7
1815 Male, age 53, unknown 57.8
2224 Female, age 72, unknown 56.3
2273 Male, age 74, both hemispheres 51.9
2825 Male, age 18, unknown 51.3
2316 Male, age 76, right hemisphere 48.7
2407 Male, age 75, both hemispheres 46.8
Red nucleus
nTPM: 53.2
1821 Female, age 72, unknown 59.8
2725 Female, age 75, unknown 58.6
2785 Male, age 18, unknown 56.9
1954 Female, age 42, unknown 53.0
2503 Female, age 72, unknown 51.8
2584 Male, age 75, left hemisphere 51.7
1904 Male, age 53, unknown 51.4
2769 Male, age 72, unknown 51.4
1865 Male, age 51, unknown 51.1
2227 Male, age 72, unknown 50.9
2823 Male, age 76, right hemisphere 50.7
2588 Male, age 74, left hemisphere 50.3
Substantia nigra
nTPM: 61.4
1916 Female, age 42, unknown 74.3
1889 Female, age 72, unknown 65.2
1851 Male, age 51, unknown 65.1
2241 Male, age 72, unknown 64.4
1941 Male, age 53, unknown 62.5
2665 Male, age 74, both hemispheres 62.0
2409 Female, age 72, unknown 57.4
2699 Male, age 18, unknown 55.7
2583 Male, age 75, right hemisphere 55.2
2590 Female, age 75, unknown 52.8
Superior colliculus
nTPM: 53.4
2087 Female, age 72, unknown 59.3
1796 Male, age 53, unknown 58.6
1895 Male, age 76, right hemisphere 55.7
2587 Male, age 74, left hemisphere 55.6
2261 Male, age 18, unknown 54.8
1839 Male, age 51, unknown 53.5
2668 Female, age 75, unknown 52.1
2664 Male, age 75, both hemispheres 50.1
1913 Female, age 42, unknown 47.8
1995 Male, age 72, unknown 46.0
Ventral tegmental area
nTPM: 58.2
2410 Female, age 72, unknown 66.8
1915 Female, age 42, unknown 64.3
2218 Male, age 76, both hemispheres 62.1
1942 Male, age 51, unknown 53.2
2223 Female, age 72, unknown 52.8
2021 Male, age 53, unknown 49.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.1
Samples: 139

Max nTPM: 150.6
Min nTPM: 34.3
Std nTPM: 21.9
Median nTPM: 65.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 150.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 137.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 135.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 135.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 120.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 118.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 113.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 113.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 109.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 107.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 104.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.9
FF:10158-103A5 76 years, female 148.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 180.0
Pig sample Sample description nTPM
Midbrain
nTPM: 143.7
Samples: 4

Max nTPM: 212.0
Min nTPM: 103.3
Sample A Female 120.9
Sample B Female 103.3
Sample C Male 212.0
Sample D Male 138.7
Periaqueductal gray
nTPM: 93.1
Samples: 3

Max nTPM: 106.4
Min nTPM: 78.7
Sample B Female 94.1
Sample C Male 106.4
Sample D Male 78.7
Substantia nigra
nTPM: 119.2
Samples: 4

Max nTPM: 171.3
Min nTPM: 85.1
Sample A Female 171.3
Sample B Female 87.5
Sample C Male 132.8
Sample D Male 85.1
Superior colliculi
nTPM: 180.0
Samples: 4

Max nTPM: 236.5
Min nTPM: 127.2
Sample A Female 202.3
Sample B Female 127.2
Sample C Male 236.5
Sample D Male 153.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 320.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 320.7
Samples: 4

Max nTPM: 338.4
Min nTPM: 301.4
Sample A Male 338.4
Sample B Male 313.6
Sample C Female 301.4
Sample D Female 329.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.9
68080709 Antisense, RP_040929_01_G10, Mouse strain C57BL/6J (56 days, male) 19.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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