MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.7 nTPM
HPA:48.7 nTPM
GTEx:58.8 nTPM
FANTOM5:118.3 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:73.0 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.9
2586 Male, age 75, left hemisphere 50.2
1870 Female, age 42, unknown 46.0
2411 Female, age 72, unknown 46.0
1827 Male, age 72, unknown 45.8
2828 Female, age 72, unknown 45.3
2019 Male, age 18, unknown 43.6
2219 Male, age 76, both hemispheres 43.4
1833 Male, age 53, unknown 43.2
2666 Male, age 74, left hemisphere 43.2
1830 Male, age 51, unknown 42.4
Dorsal raphe nucleus
nTPM: 48.7
2298 Female, age 72, unknown 54.6
2016 Female, age 72, unknown 48.5
2047 Male, age 72, unknown 48.5
1828 Male, age 53, unknown 47.4
2750 Male, age 76, both hemispheres 44.2
Inferior colliculus
nTPM: 48.4
2097 Female, age 72, unknown 53.0
1890 Male, age 53, unknown 47.7
1848 Female, age 42, unknown 47.6
2849 Male, age 72, unknown 45.2
Median raphe nucleus
nTPM: 46.3
2220 Male, age 76, midline 46.3
Pedunculopontine tegmental nucleus
nTPM: 45.3
1921 Female, age 85, both hemispheres 47.2
2334 Male, age 80, both hemispheres 45.8
2338 Male, age 61, both hemispheres 43.0
Periaquaductal grey, anterior
nTPM: 47.7
1947 Male, age 18, unknown 48.7
1795 Male, age 51, unknown 47.8
2502 Female, age 75, unknown 46.5
Periaquaductal grey, dorsal
nTPM: 46.8
1840 Male, age 53, unknown 49.5
2850 Male, age 76, both hemispheres 47.0
2464 Female, age 72, unknown 46.2
1831 Male, age 72, unknown 44.4
Periaquaductal grey, lateral
nTPM: 45.9
2272 Male, age 74, both hemispheres 47.5
2053 Male, age 18, unknown 45.8
2140 Male, age 76, both hemispheres 44.4
Pretectal area
nTPM: 47.8
1816 Male, age 51, unknown 50.7
1817 Female, age 42, unknown 50.0
2224 Female, age 72, unknown 49.8
1944 Female, age 72, unknown 49.7
2273 Male, age 74, both hemispheres 49.4
2007 Male, age 72, unknown 48.7
1815 Male, age 53, unknown 48.3
2667 Female, age 75, unknown 48.2
2825 Male, age 18, unknown 46.2
2316 Male, age 76, right hemisphere 44.8
2407 Male, age 75, both hemispheres 40.4
Red nucleus
nTPM: 45.0
1821 Female, age 72, unknown 48.6
2503 Female, age 72, unknown 48.5
2725 Female, age 75, unknown 46.9
1954 Female, age 42, unknown 45.6
2769 Male, age 72, unknown 44.8
2823 Male, age 76, right hemisphere 44.7
1904 Male, age 53, unknown 44.3
2227 Male, age 72, unknown 44.3
1865 Male, age 51, unknown 43.5
2785 Male, age 18, unknown 43.5
2588 Male, age 74, left hemisphere 42.8
2584 Male, age 75, left hemisphere 42.1
Substantia nigra
nTPM: 47.4
2241 Male, age 72, unknown 51.5
1889 Female, age 72, unknown 49.8
1851 Male, age 51, unknown 48.9
1916 Female, age 42, unknown 48.9
2409 Female, age 72, unknown 48.5
2699 Male, age 18, unknown 48.0
1941 Male, age 53, unknown 46.8
2590 Female, age 75, unknown 45.5
2665 Male, age 74, both hemispheres 43.5
2583 Male, age 75, right hemisphere 43.1
Superior colliculus
nTPM: 46.3
2261 Male, age 18, unknown 49.2
2087 Female, age 72, unknown 48.9
1796 Male, age 53, unknown 47.3
2587 Male, age 74, left hemisphere 46.4
1995 Male, age 72, unknown 46.3
2668 Female, age 75, unknown 46.3
1839 Male, age 51, unknown 45.5
1895 Male, age 76, right hemisphere 44.9
1913 Female, age 42, unknown 44.1
2664 Male, age 75, both hemispheres 43.8
Ventral tegmental area
nTPM: 46.4
2410 Female, age 72, unknown 48.6
1915 Female, age 42, unknown 47.4
1942 Male, age 51, unknown 47.2
2021 Male, age 53, unknown 46.2
2218 Male, age 76, both hemispheres 45.6
2223 Female, age 72, unknown 43.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.8
Samples: 139

Max nTPM: 114.4
Min nTPM: 26.1
Std nTPM: 17.4
Median nTPM: 58.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 114.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 105.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 102.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 101.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 99.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 97.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 94.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 94.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 93.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 93.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 83.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.3
FF:10158-103A5 76 years, female 118.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.0
Pig sample Sample description nTPM
Midbrain
nTPM: 37.5
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.2
Sample A Female 37.8
Sample B Female 35.9
Sample C Male 41.0
Sample D Male 35.2
Periaqueductal gray
nTPM: 33.8
Samples: 3

Max nTPM: 35.8
Min nTPM: 31.1
Sample B Female 35.8
Sample C Male 34.5
Sample D Male 31.1
Substantia nigra
nTPM: 36.2
Samples: 4

Max nTPM: 37.9
Min nTPM: 35.1
Sample A Female 37.9
Sample B Female 35.4
Sample C Male 36.4
Sample D Male 35.1
Superior colliculi
nTPM: 38.0
Samples: 4

Max nTPM: 40.5
Min nTPM: 34.8
Sample A Female 38.9
Sample B Female 34.8
Sample C Male 40.5
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 73.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 74.1
Min nTPM: 70.8
Sample A Male 74.1
Sample B Male 74.1
Sample C Female 70.8
Sample D Female 72.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
69549646 Antisense, RP_050310_01_D10, Mouse strain C57BL/6J (56 days, male) 6.6
74819681 Antisense, RP_060315_02_G11, Mouse strain C57BL/6J (56 days, male) 6.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.