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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:20.1 nTPM
HPA:20.1 nTPM
GTEx:11.4 nTPM
FANTOM5:31.9 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 20.1
Sample id Sample description nTPM
Amygdala
nTPM: 15.9
2517 Female, age 94, left hemisphere 17.6
2514 Male, age 75, right hemisphere 17.0
1987 Female, age 91, left hemisphere 16.3
2695 Female, age 67, right hemisphere 14.8
2814 Male, age 76, right hemisphere 14.0
Basal amygdala
nTPM: 17.4
2243 Female, age 91, right hemisphere 19.6
2685 Female, age 94, left hemisphere 17.9
2609 Male, age 75, right hemisphere 17.4
2110 Male, age 80, left hemisphere 17.2
2827 Female, age 67, right hemisphere 16.2
1955 Male, age 76, both hemispheres 15.9
Central amygdala
nTPM: 17.0
2701 Female, age 91, right hemisphere 20.2
2239 Male, age 80, left hemisphere 19.3
2515 Male, age 75, right hemisphere 16.2
2826 Female, age 94, left hemisphere 15.0
1905 Male, age 76, both hemispheres 14.5
Corticomedial amygdala
nTPM: 18.7
2242 Female, age 91, right hemisphere 19.2
2429 Female, age 94, left hemisphere 19.1
2535 Female, age 67, right hemisphere 19.0
2428 Male, age 75, right hemisphere 18.5
2240 Male, age 76, both hemispheres 18.4
2829 Male, age 80, left hemisphere 17.9
Lateral amygdala
nTPM: 17.1
2255 Female, age 91, right hemisphere 19.3
2830 Female, age 67, right hemisphere 17.8
2516 Male, age 75, right hemisphere 17.2
2256 Male, age 80, left hemisphere 17.0
2534 Female, age 94, left hemisphere 15.7
1883 Male, age 76, both hemispheres 15.5
Stria terminalis, bed nucleus
nTPM: 20.1
2201 Male, age 74, unknown 21.0
1974 Female, age 91, both hemispheres 19.9
2486 Female, age 94, both hemispheres 19.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 11.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 11.4
Samples: 152

Max nTPM: 18.2
Min nTPM: 5.5
Std nTPM: 2.2
Median nTPM: 11.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 18.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 17.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 16.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 16.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 16.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 15.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 15.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 15.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 14.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 14.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 14.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 14.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 14.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 14.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 14.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 14.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 14.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 13.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 13.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 13.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 13.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 13.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 13.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 13.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 13.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 13.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 13.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 13.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 13.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 13.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 13.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 13.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 13.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 13.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 13.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 13.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 13.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 12.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 12.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 12.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 12.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 12.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 12.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 12.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 12.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 12.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 12.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 12.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 12.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 12.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 12.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 12.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 12.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 12.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 12.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 12.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 11.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 11.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 11.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 11.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 11.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 11.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 11.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 11.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 11.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 11.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 11.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 11.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 11.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 11.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 11.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 11.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 11.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 11.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 11.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 11.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 11.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 11.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 11.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 11.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 10.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 10.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 10.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 10.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 10.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 10.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 10.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 10.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 10.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 10.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 10.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 10.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 10.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 10.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 10.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 10.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 10.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 10.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 10.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 10.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 10.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 10.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 10.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 10.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 10.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 10.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 10.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 10.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 10.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 10.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 10.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 9.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 9.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 9.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 9.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 9.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 9.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 9.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 9.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 9.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 9.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 9.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 9.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 9.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 9.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 9.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 9.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 9.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 9.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 9.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 9.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 9.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 8.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 8.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 8.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 8.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 8.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 8.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 8.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 7.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 7.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 7.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 7.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 6.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 6.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 31.9
FF:10151-102I7 76 years, female 31.9

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