MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:139.0 nTPM
HPA:139.0 nTPM
GTEx:88.9 nTPM
FANTOM5:112.7 Scaled Tags Per Million
Pig:51.8 nTPM
Mouse:149.6 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.1
2019 Male, age 18, unknown 146.4
2586 Male, age 75, left hemisphere 136.9
1827 Male, age 72, unknown 132.1
2828 Female, age 72, unknown 131.2
1870 Female, age 42, unknown 127.8
2666 Male, age 74, left hemisphere 127.2
2411 Female, age 72, unknown 126.8
2219 Male, age 76, both hemispheres 126.1
1833 Male, age 53, unknown 124.0
1830 Male, age 51, unknown 122.8
Dorsal raphe nucleus
nTPM: 129.4
2298 Female, age 72, unknown 136.6
1828 Male, age 53, unknown 130.3
2047 Male, age 72, unknown 130.0
2750 Male, age 76, both hemispheres 127.8
2016 Female, age 72, unknown 122.5
Inferior colliculus
nTPM: 130.0
2097 Female, age 72, unknown 135.7
1890 Male, age 53, unknown 134.2
1848 Female, age 42, unknown 128.3
2849 Male, age 72, unknown 121.7
Median raphe nucleus
nTPM: 128.0
2220 Male, age 76, midline 128.0
Pedunculopontine tegmental nucleus
nTPM: 134.2
2338 Male, age 61, both hemispheres 136.6
2334 Male, age 80, both hemispheres 135.9
1921 Female, age 85, both hemispheres 130.2
Periaquaductal grey, anterior
nTPM: 130.2
1795 Male, age 51, unknown 131.7
1947 Male, age 18, unknown 131.6
2502 Female, age 75, unknown 127.4
Periaquaductal grey, dorsal
nTPM: 121.3
1831 Male, age 72, unknown 124.5
2850 Male, age 76, both hemispheres 121.3
1840 Male, age 53, unknown 120.5
2464 Female, age 72, unknown 119.1
Periaquaductal grey, lateral
nTPM: 127.2
2272 Male, age 74, both hemispheres 134.9
2053 Male, age 18, unknown 126.4
2140 Male, age 76, both hemispheres 120.4
Pretectal area
nTPM: 139.0
2007 Male, age 72, unknown 160.7
1817 Female, age 42, unknown 152.2
1816 Male, age 51, unknown 150.9
1944 Female, age 72, unknown 147.1
2667 Female, age 75, unknown 140.9
1815 Male, age 53, unknown 140.7
2224 Female, age 72, unknown 133.6
2273 Male, age 74, both hemispheres 131.4
2407 Male, age 75, both hemispheres 125.7
2825 Male, age 18, unknown 123.6
2316 Male, age 76, right hemisphere 122.7
Red nucleus
nTPM: 131.3
2785 Male, age 18, unknown 141.5
1821 Female, age 72, unknown 138.2
2503 Female, age 72, unknown 135.7
2588 Male, age 74, left hemisphere 130.6
1865 Male, age 51, unknown 130.4
1954 Female, age 42, unknown 130.1
2725 Female, age 75, unknown 129.7
2227 Male, age 72, unknown 129.1
1904 Male, age 53, unknown 128.4
2769 Male, age 72, unknown 128.4
2584 Male, age 75, left hemisphere 127.6
2823 Male, age 76, right hemisphere 125.7
Substantia nigra
nTPM: 132.9
1889 Female, age 72, unknown 143.6
1916 Female, age 42, unknown 141.9
1851 Male, age 51, unknown 138.4
2665 Male, age 74, both hemispheres 135.9
1941 Male, age 53, unknown 135.0
2590 Female, age 75, unknown 130.3
2409 Female, age 72, unknown 128.2
2583 Male, age 75, right hemisphere 127.7
2241 Male, age 72, unknown 125.2
2699 Male, age 18, unknown 122.5
Superior colliculus
nTPM: 131.5
1796 Male, age 53, unknown 136.9
2087 Female, age 72, unknown 136.2
2587 Male, age 74, left hemisphere 135.9
2668 Female, age 75, unknown 135.3
2261 Male, age 18, unknown 131.4
1895 Male, age 76, right hemisphere 130.6
1913 Female, age 42, unknown 129.6
1995 Male, age 72, unknown 129.0
2664 Male, age 75, both hemispheres 125.4
1839 Male, age 51, unknown 125.1
Ventral tegmental area
nTPM: 131.0
1915 Female, age 42, unknown 136.6
2223 Female, age 72, unknown 132.5
2410 Female, age 72, unknown 132.5
2218 Male, age 76, both hemispheres 130.4
1942 Male, age 51, unknown 128.6
2021 Male, age 53, unknown 125.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 88.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.9
Samples: 139

Max nTPM: 192.5
Min nTPM: 47.9
Std nTPM: 21.5
Median nTPM: 86.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 192.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 159.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 138.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 138.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 132.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 130.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 129.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 129.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 125.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 125.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.7
FF:10158-103A5 76 years, female 112.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.8
Pig sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 48.5
Min nTPM: 37.7
Sample A Female 47.4
Sample B Female 37.7
Sample C Male 48.5
Sample D Male 43.5
Periaqueductal gray
nTPM: 33.6
Samples: 3

Max nTPM: 37.6
Min nTPM: 31.1
Sample B Female 32.0
Sample C Male 37.6
Sample D Male 31.1
Substantia nigra
nTPM: 41.0
Samples: 4

Max nTPM: 57.7
Min nTPM: 31.9
Sample A Female 57.7
Sample B Female 31.9
Sample C Male 42.2
Sample D Male 32.3
Superior colliculi
nTPM: 51.8
Samples: 4

Max nTPM: 65.1
Min nTPM: 39.2
Sample A Female 65.1
Sample B Female 39.2
Sample C Male 59.1
Sample D Male 43.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 149.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 149.6
Samples: 4

Max nTPM: 171.5
Min nTPM: 129.5
Sample A Male 171.5
Sample B Male 143.2
Sample C Female 129.5
Sample D Female 154.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
67764909 Antisense, RP_040916_02_C04, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.