BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.3 nTPM
HPA:38.3 nTPM
GTEx:28.3 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Pig:29.8 nTPM
Mouse:38.0 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB070423
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.2
2846 Female, age 79, unknown 35.3
2288 Male, age 75, left hemisphere 34.5
2481 Female, age 94, left hemisphere 34.2
2290 Female, age 72, unknown 33.8
1857 Female, age 85, left hemisphere 31.5
1854 Male, age 80, left hemisphere 31.2
1781 Male, age 74, unknown 30.4
2289 Male, age 61, right hemisphere 27.0
Claustrum
nTPM: 32.7
2196 Female, age 79, unknown 34.1
2198 Male, age 80, both hemispheres 33.8
2491 Male, age 75, both hemispheres 33.3
2392 Female, age 94, both hemispheres 33.0
2645 Female, age 72, unknown 32.9
2284 Female, age 91, both hemispheres 32.7
2568 Male, age 61, both hemispheres 32.5
1956 Male, age 74, unknown 31.7
2292 Female, age 85, both hemispheres 30.2
Globus pallidus, externus
nTPM: 38.3
2567 Female, age 72, unknown 41.8
2646 Male, age 61, right hemisphere 38.7
1996 Male, age 80, right hemisphere 37.8
2395 Male, age 75, both hemispheres 36.5
2772 Female, age 79, unknown 36.5
Globus pallidus, internus
nTPM: 37.4
2483 Female, age 94, right hemisphere 45.4
2287 Male, age 75, right hemisphere 40.9
2566 Female, age 72, unknown 38.9
2037 Male, age 80, right hemisphere 37.0
1818 Male, age 74, unknown 36.7
2778 Female, age 91, both hemispheres 32.2
2111 Female, age 85, right hemisphere 30.5
Nucleus accumbens
nTPM: 31.5
2286 Male, age 75, left hemisphere 34.1
1856 Female, age 91, right hemisphere 33.5
2698 Female, age 72, unknown 33.4
1783 Male, age 74, unknown 32.0
2824 Male, age 61, right hemisphere 30.6
2391 Female, age 94, left hemisphere 30.0
1806 Female, age 85, left hemisphere 29.3
2732 Male, age 80, right hemisphere 29.1
Nucleus basalis of Meynert
nTPM: 35.1
2569 Male, age 61, both hemispheres 42.0
2484 Female, age 94, left hemisphere 34.0
2821 Male, age 75, both hemispheres 33.0
2393 Male, age 80, right hemisphere 31.3
Nucleus of the diagonal band
nTPM: 34.8
1812 Female, age 91, both hemispheres 38.4
2775 Male, age 80, right hemisphere 36.5
2029 Male, age 61, right hemisphere 34.0
2195 Female, age 85, both hemispheres 33.3
1979 Male, age 74, unknown 31.8
Olfactory tubercle
nTPM: 32.9
1998 Female, age 91, both hemispheres 36.2
1846 Male, age 80, right hemisphere 35.5
2487 Female, age 94, left hemisphere 30.5
2856 Male, age 75, right hemisphere 29.6
Putamen
nTPM: 32.8
2647 Male, age 75, left hemisphere 35.0
2482 Female, age 94, left hemisphere 34.5
2489 Female, age 72, unknown 32.4
2466 Female, age 79, unknown 32.3
1937 Female, age 91, right hemisphere 32.1
1838 Male, age 80, right hemisphere 31.7
1829 Male, age 74, unknown 31.6
Septal nuclei
nTPM: 32.4
1960 Male, age 74, unknown 36.3
2031 Female, age 72, unknown 35.4
2009 Female, age 91, both hemispheres 32.9
2059 Female, age 85, both hemispheres 31.0
2629 Female, age 94, right hemisphere 30.9
2394 Male, age 61, left hemisphere 30.5
2199 Male, age 80, right hemisphere 29.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.8
Samples: 246

Max nTPM: 47.7
Min nTPM: 16.8
Std nTPM: 3.8
Median nTPM: 25.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 47.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 39.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 37.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 36.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 36.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 35.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 35.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 35.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 34.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 34.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.9
Samples: 246

Max nTPM: 42.2
Min nTPM: 17.4
Std nTPM: 4.0
Median nTPM: 26.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 42.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 41.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 38.7
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 37.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 37.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 36.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 36.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 35.6
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 35.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 34.8
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 34.1
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Brain - Putamen (basal ganglia)
Average nTPM: 28.3
Samples: 205

Max nTPM: 48.7
Min nTPM: 16.9
Std nTPM: 4.6
Median nTPM: 27.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 48.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 46.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 46.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 42.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 42.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 42.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 38.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 38.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 36.8
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 36.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 36.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.8
FF:10164-103B2 76 years, female 32.8
Globus pallidus
Scaled Tags Per Million: 42.4
FF:10175-103C4 60 years, female 48.1
FF:10161-103A8 76 years, female 36.6
Nucleus accumbens
Scaled Tags Per Million: 35.9
FF:10037-101F1 23-56 years, mixed 35.9
Putamen
Scaled Tags Per Million: 30.3
FF:10176-103C5 60 years, female 30.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.8
Pig sample Sample description nTPM
Caudate
nTPM: 27.1
Samples: 4

Max nTPM: 28.7
Min nTPM: 26.1
Sample A Female 26.8
Sample B Female 26.7
Sample C Male 28.7
Sample D Male 26.1
Putamen
nTPM: 29.6
Samples: 4

Max nTPM: 34.5
Min nTPM: 27.3
Sample A Female 27.3
Sample B Female 28.0
Sample C Male 34.5
Sample D Male 28.7
Septum
nTPM: 29.8
Samples: 4

Max nTPM: 32.8
Min nTPM: 27.4
Sample A Female 30.7
Sample B Female 27.4
Sample C Male 32.8
Sample D Male 28.1
Ventral pallidum
nTPM: 28.0
Samples: 4

Max nTPM: 30.9
Min nTPM: 24.9
Sample A Female 27.8
Sample B Female 28.4
Sample C Male 30.9
Sample D Male 24.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 36.9
Samples: 4

Max nTPM: 40.8
Min nTPM: 34.9
Sample A Male 35.5
Sample B Male 34.9
Sample C Female 40.8
Sample D Female 36.2
Septum
nTPM: 37.9
Samples: 4

Max nTPM: 41.9
Min nTPM: 35.6
Sample A Male 37.1
Sample B Male 41.9
Sample C Female 35.6
Sample D Female 37.1
Ventral forebrain
nTPM: 36.0
Samples: 4

Max nTPM: 38.1
Min nTPM: 33.2
Sample A Male 33.2
Sample B Male 36.8
Sample C Female 38.1
Sample D Female 35.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68269270 Antisense, RP_041208_02_A04, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.4
68269270 Antisense, RP_041208_02_A04, Mouse strain C57BL/6J (56 days, male) 0.4

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