MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:113.7 nTPM
HPA:113.7 nTPM
GTEx:159.5 nTPM
FANTOM5:162.3 Scaled Tags Per Million
Pig:172.7 nTPM
Mouse:194.9 nTPM
Allen mouse:11.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.5
1870 Female, age 42, unknown 111.6
1833 Male, age 53, unknown 109.8
2411 Female, age 72, unknown 109.0
1827 Male, age 72, unknown 108.1
1830 Male, age 51, unknown 106.4
2666 Male, age 74, left hemisphere 104.1
2219 Male, age 76, both hemispheres 103.8
2828 Female, age 72, unknown 103.8
2019 Male, age 18, unknown 103.5
2586 Male, age 75, left hemisphere 95.2
Dorsal raphe nucleus
nTPM: 107.5
2298 Female, age 72, unknown 110.4
2750 Male, age 76, both hemispheres 109.4
2047 Male, age 72, unknown 107.2
2016 Female, age 72, unknown 106.7
1828 Male, age 53, unknown 103.7
Inferior colliculus
nTPM: 108.0
2097 Female, age 72, unknown 109.4
1848 Female, age 42, unknown 108.3
2849 Male, age 72, unknown 107.8
1890 Male, age 53, unknown 106.5
Median raphe nucleus
nTPM: 113.6
2220 Male, age 76, midline 113.6
Pedunculopontine tegmental nucleus
nTPM: 111.2
2338 Male, age 61, both hemispheres 115.7
2334 Male, age 80, both hemispheres 112.4
1921 Female, age 85, both hemispheres 105.6
Periaquaductal grey, anterior
nTPM: 110.9
1947 Male, age 18, unknown 115.8
2502 Female, age 75, unknown 111.8
1795 Male, age 51, unknown 105.2
Periaquaductal grey, dorsal
nTPM: 106.3
1840 Male, age 53, unknown 108.8
1831 Male, age 72, unknown 107.2
2850 Male, age 76, both hemispheres 107.1
2464 Female, age 72, unknown 102.2
Periaquaductal grey, lateral
nTPM: 105.9
2053 Male, age 18, unknown 111.1
2272 Male, age 74, both hemispheres 104.3
2140 Male, age 76, both hemispheres 102.4
Pretectal area
nTPM: 107.1
2407 Male, age 75, both hemispheres 109.2
1817 Female, age 42, unknown 108.6
1816 Male, age 51, unknown 108.5
2825 Male, age 18, unknown 108.4
1815 Male, age 53, unknown 108.3
2224 Female, age 72, unknown 108.3
2667 Female, age 75, unknown 106.7
1944 Female, age 72, unknown 106.4
2007 Male, age 72, unknown 106.0
2273 Male, age 74, both hemispheres 105.2
2316 Male, age 76, right hemisphere 102.3
Red nucleus
nTPM: 108.9
1821 Female, age 72, unknown 116.8
2503 Female, age 72, unknown 114.1
1865 Male, age 51, unknown 111.7
2725 Female, age 75, unknown 110.8
1904 Male, age 53, unknown 110.2
1954 Female, age 42, unknown 108.6
2227 Male, age 72, unknown 108.4
2584 Male, age 75, left hemisphere 108.1
2823 Male, age 76, right hemisphere 107.3
2769 Male, age 72, unknown 106.8
2588 Male, age 74, left hemisphere 103.6
2785 Male, age 18, unknown 100.2
Substantia nigra
nTPM: 113.7
2409 Female, age 72, unknown 119.9
1851 Male, age 51, unknown 119.5
1916 Female, age 42, unknown 115.6
2699 Male, age 18, unknown 114.0
2665 Male, age 74, both hemispheres 113.7
2241 Male, age 72, unknown 113.5
1889 Female, age 72, unknown 112.8
2590 Female, age 75, unknown 112.8
1941 Male, age 53, unknown 112.6
2583 Male, age 75, right hemisphere 102.3
Superior colliculus
nTPM: 107.7
2587 Male, age 74, left hemisphere 116.3
1895 Male, age 76, right hemisphere 111.4
1913 Female, age 42, unknown 108.7
1839 Male, age 51, unknown 108.1
1796 Male, age 53, unknown 107.4
1995 Male, age 72, unknown 107.3
2261 Male, age 18, unknown 107.2
2668 Female, age 75, unknown 105.5
2087 Female, age 72, unknown 104.1
2664 Male, age 75, both hemispheres 101.2
Ventral tegmental area
nTPM: 111.1
1915 Female, age 42, unknown 115.5
2410 Female, age 72, unknown 114.0
2223 Female, age 72, unknown 112.8
2218 Male, age 76, both hemispheres 111.7
2021 Male, age 53, unknown 107.5
1942 Male, age 51, unknown 105.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.5
Samples: 139

Max nTPM: 280.6
Min nTPM: 98.3
Std nTPM: 34.9
Median nTPM: 151.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 280.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 273.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 271.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 259.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 248.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 230.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 220.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 219.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 219.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 218.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 217.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 162.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.3
FF:10158-103A5 76 years, female 162.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 172.7
Pig sample Sample description nTPM
Midbrain
nTPM: 164.6
Samples: 4

Max nTPM: 211.1
Min nTPM: 141.2
Sample A Female 211.1
Sample B Female 156.3
Sample C Male 149.9
Sample D Male 141.2
Periaqueductal gray
nTPM: 121.8
Samples: 3

Max nTPM: 129.1
Min nTPM: 112.6
Sample B Female 123.7
Sample C Male 129.1
Sample D Male 112.6
Substantia nigra
nTPM: 156.6
Samples: 4

Max nTPM: 211.0
Min nTPM: 121.8
Sample A Female 211.0
Sample B Female 148.2
Sample C Male 145.5
Sample D Male 121.8
Superior colliculi
nTPM: 172.7
Samples: 4

Max nTPM: 219.4
Min nTPM: 152.6
Sample A Female 219.4
Sample B Female 154.1
Sample C Male 164.7
Sample D Male 152.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 194.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 194.9
Samples: 4

Max nTPM: 203.2
Min nTPM: 186.1
Sample A Male 203.2
Sample B Male 194.2
Sample C Female 186.1
Sample D Female 195.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.6
67765724 Antisense, RP_040916_01_F09, Mouse strain C57BL/6J (56 days, male) 11.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.