MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA:32.3 nTPM
GTEx:63.8 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:77.2 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
2586 Male, age 75, left hemisphere 33.6
2828 Female, age 72, unknown 32.7
2411 Female, age 72, unknown 32.2
1827 Male, age 72, unknown 32.1
1870 Female, age 42, unknown 32.0
2019 Male, age 18, unknown 31.8
2666 Male, age 74, left hemisphere 31.5
1830 Male, age 51, unknown 30.7
1833 Male, age 53, unknown 30.4
2219 Male, age 76, both hemispheres 30.2
Dorsal raphe nucleus
nTPM: 32.2
2298 Female, age 72, unknown 33.0
2016 Female, age 72, unknown 32.6
1828 Male, age 53, unknown 32.2
2047 Male, age 72, unknown 31.7
2750 Male, age 76, both hemispheres 31.3
Inferior colliculus
nTPM: 31.2
2097 Female, age 72, unknown 32.1
1890 Male, age 53, unknown 31.9
1848 Female, age 42, unknown 30.8
2849 Male, age 72, unknown 30.1
Median raphe nucleus
nTPM: 31.0
2220 Male, age 76, midline 31.0
Pedunculopontine tegmental nucleus
nTPM: 30.5
1921 Female, age 85, both hemispheres 30.8
2334 Male, age 80, both hemispheres 30.6
2338 Male, age 61, both hemispheres 30.0
Periaquaductal grey, anterior
nTPM: 32.3
2502 Female, age 75, unknown 32.8
1795 Male, age 51, unknown 32.1
1947 Male, age 18, unknown 32.0
Periaquaductal grey, dorsal
nTPM: 31.0
1840 Male, age 53, unknown 32.0
1831 Male, age 72, unknown 30.9
2464 Female, age 72, unknown 30.9
2850 Male, age 76, both hemispheres 30.3
Periaquaductal grey, lateral
nTPM: 31.0
2053 Male, age 18, unknown 31.2
2140 Male, age 76, both hemispheres 31.1
2272 Male, age 74, both hemispheres 30.7
Pretectal area
nTPM: 31.5
2007 Male, age 72, unknown 32.3
2273 Male, age 74, both hemispheres 32.0
1817 Female, age 42, unknown 31.9
2667 Female, age 75, unknown 31.9
1815 Male, age 53, unknown 31.6
1944 Female, age 72, unknown 31.6
1816 Male, age 51, unknown 31.2
2224 Female, age 72, unknown 31.1
2316 Male, age 76, right hemisphere 31.1
2825 Male, age 18, unknown 31.1
2407 Male, age 75, both hemispheres 31.0
Red nucleus
nTPM: 31.9
2503 Female, age 72, unknown 32.9
2769 Male, age 72, unknown 32.3
2227 Male, age 72, unknown 32.1
2785 Male, age 18, unknown 32.1
1954 Female, age 42, unknown 32.0
1904 Male, age 53, unknown 31.9
2725 Female, age 75, unknown 31.9
1821 Female, age 72, unknown 31.8
2588 Male, age 74, left hemisphere 31.8
1865 Male, age 51, unknown 31.6
2584 Male, age 75, left hemisphere 31.1
2823 Male, age 76, right hemisphere 31.1
Substantia nigra
nTPM: 31.8
1851 Male, age 51, unknown 33.4
1916 Female, age 42, unknown 32.8
2241 Male, age 72, unknown 32.1
2665 Male, age 74, both hemispheres 32.1
2409 Female, age 72, unknown 31.7
2583 Male, age 75, right hemisphere 31.5
2699 Male, age 18, unknown 31.5
1889 Female, age 72, unknown 31.3
1941 Male, age 53, unknown 31.1
2590 Female, age 75, unknown 30.9
Superior colliculus
nTPM: 31.4
1796 Male, age 53, unknown 32.1
2664 Male, age 75, both hemispheres 31.9
2261 Male, age 18, unknown 31.8
1913 Female, age 42, unknown 31.6
1895 Male, age 76, right hemisphere 31.4
2668 Female, age 75, unknown 31.4
1839 Male, age 51, unknown 31.3
1995 Male, age 72, unknown 31.1
2087 Female, age 72, unknown 30.8
2587 Male, age 74, left hemisphere 30.7
Ventral tegmental area
nTPM: 31.8
1915 Female, age 42, unknown 33.0
1942 Male, age 51, unknown 32.3
2410 Female, age 72, unknown 32.2
2021 Male, age 53, unknown 31.2
2218 Male, age 76, both hemispheres 31.2
2223 Female, age 72, unknown 30.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.8
Samples: 139

Max nTPM: 117.1
Min nTPM: 27.5
Std nTPM: 17.3
Median nTPM: 60.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 117.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 114.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 110.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 110.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 107.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 106.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 96.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 95.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 93.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 89.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 89.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.2
FF:10158-103A5 76 years, female 13.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.0
Pig sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 40.2
Min nTPM: 26.6
Sample A Female 26.6
Sample B Female 40.2
Sample C Male 34.0
Sample D Male 29.6
Periaqueductal gray
nTPM: 26.2
Samples: 3

Max nTPM: 31.9
Min nTPM: 20.9
Sample B Female 31.9
Sample C Male 25.8
Sample D Male 20.9
Substantia nigra
nTPM: 30.6
Samples: 4

Max nTPM: 32.9
Min nTPM: 28.0
Sample A Female 31.1
Sample B Female 32.9
Sample C Male 30.3
Sample D Male 28.0
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 36.6
Min nTPM: 32.4
Sample A Female 33.4
Sample B Female 32.4
Sample C Male 36.6
Sample D Male 33.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.3
Samples: 4

Max nTPM: 81.9
Min nTPM: 72.4
Sample A Male 79.7
Sample B Male 75.0
Sample C Female 72.4
Sample D Female 81.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
69080040 Antisense, RP_050324_01_F03, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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