BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.6 nTPM
HPA:3.6 nTPM
GTEx:7.5 nTPM
FANTOM5:19.1 Scaled Tags Per Million
Pig:7.0 nTPM
Mouse:18.5 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA022911
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.1
2289 Male, age 61, right hemisphere 3.7
1854 Male, age 80, left hemisphere 3.4
1857 Female, age 85, left hemisphere 3.4
1781 Male, age 74, unknown 3.1
2290 Female, age 72, unknown 3.1
2288 Male, age 75, left hemisphere 3.0
2481 Female, age 94, left hemisphere 2.7
2846 Female, age 79, unknown 2.7
Claustrum
nTPM: 3.6
2292 Female, age 85, both hemispheres 4.3
2392 Female, age 94, both hemispheres 3.8
2284 Female, age 91, both hemispheres 3.7
2645 Female, age 72, unknown 3.7
1956 Male, age 74, unknown 3.4
2198 Male, age 80, both hemispheres 3.4
2568 Male, age 61, both hemispheres 3.4
2196 Female, age 79, unknown 3.3
2491 Male, age 75, both hemispheres 3.3
Globus pallidus, externus
nTPM: 3.5
2567 Female, age 72, unknown 4.3
2646 Male, age 61, right hemisphere 3.8
1996 Male, age 80, right hemisphere 3.2
2395 Male, age 75, both hemispheres 3.2
2772 Female, age 79, unknown 2.9
Globus pallidus, internus
nTPM: 3.6
2111 Female, age 85, right hemisphere 4.4
2778 Female, age 91, both hemispheres 4.2
2566 Female, age 72, unknown 3.6
2037 Male, age 80, right hemisphere 3.5
1818 Male, age 74, unknown 3.3
2483 Female, age 94, right hemisphere 3.2
2287 Male, age 75, right hemisphere 3.1
Nucleus accumbens
nTPM: 3.3
2732 Male, age 80, right hemisphere 3.9
1783 Male, age 74, unknown 3.5
2391 Female, age 94, left hemisphere 3.5
1856 Female, age 91, right hemisphere 3.4
1806 Female, age 85, left hemisphere 3.1
2286 Male, age 75, left hemisphere 3.0
2824 Male, age 61, right hemisphere 3.0
2698 Female, age 72, unknown 2.8
Nucleus basalis of Meynert
nTPM: 3.3
2393 Male, age 80, right hemisphere 3.6
2569 Male, age 61, both hemispheres 3.4
2484 Female, age 94, left hemisphere 3.2
2821 Male, age 75, both hemispheres 3.1
Nucleus of the diagonal band
nTPM: 3.3
1979 Male, age 74, unknown 3.5
2029 Male, age 61, right hemisphere 3.5
2775 Male, age 80, right hemisphere 3.4
2195 Female, age 85, both hemispheres 3.1
1812 Female, age 91, both hemispheres 2.8
Olfactory tubercle
nTPM: 3.4
1998 Female, age 91, both hemispheres 3.9
2487 Female, age 94, left hemisphere 3.7
2856 Male, age 75, right hemisphere 3.2
1846 Male, age 80, right hemisphere 2.7
Putamen
nTPM: 3.5
2466 Female, age 79, unknown 4.0
2489 Female, age 72, unknown 4.0
1937 Female, age 91, right hemisphere 3.9
1829 Male, age 74, unknown 3.3
2647 Male, age 75, left hemisphere 3.2
1838 Male, age 80, right hemisphere 3.1
2482 Female, age 94, left hemisphere 2.8
Septal nuclei
nTPM: 3.2
2031 Female, age 72, unknown 3.5
2059 Female, age 85, both hemispheres 3.4
2394 Male, age 61, left hemisphere 3.4
2009 Female, age 91, both hemispheres 3.2
2199 Male, age 80, right hemisphere 3.1
1960 Male, age 74, unknown 3.0
2629 Female, age 94, right hemisphere 2.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.3
Samples: 246

Max nTPM: 13.5
Min nTPM: 2.7
Std nTPM: 1.7
Median nTPM: 7.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 13.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 12.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 12.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 12.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 11.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 11.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 11.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 11.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 11.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 10.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 10.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 13.0
Min nTPM: 1.1
Std nTPM: 1.6
Median nTPM: 6.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 13.0
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 12.6
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 11.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 10.8
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 10.7
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 10.6
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 10.4
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 9.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 9.9
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 9.6
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 9.4
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Brain - Putamen (basal ganglia)
Average nTPM: 7.5
Samples: 205

Max nTPM: 16.0
Min nTPM: 3.2
Std nTPM: 1.8
Median nTPM: 7.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 16.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 12.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 12.6
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 12.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 12.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 12.1
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 11.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 11.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 11.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 11.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 10.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.6
FF:10164-103B2 76 years, female 14.6
Globus pallidus
Scaled Tags Per Million: 19.1
FF:10175-103C4 60 years, female 21.3
FF:10161-103A8 76 years, female 16.9
Nucleus accumbens
Scaled Tags Per Million: 18.0
FF:10037-101F1 23-56 years, mixed 18.0
Putamen
Scaled Tags Per Million: 15.1
FF:10176-103C5 60 years, female 15.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.0
Pig sample Sample description nTPM
Caudate
nTPM: 5.5
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.8
Sample A Female 5.7
Sample B Female 4.8
Sample C Male 5.9
Sample D Male 5.4
Putamen
nTPM: 5.7
Samples: 4

Max nTPM: 7.0
Min nTPM: 4.6
Sample A Female 6.5
Sample B Female 4.6
Sample C Male 7.0
Sample D Male 4.8
Septum
nTPM: 7.0
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.9
Sample A Female 7.3
Sample B Female 5.9
Sample C Male 8.4
Sample D Male 6.2
Ventral pallidum
nTPM: 6.2
Samples: 4

Max nTPM: 9.1
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.4
Sample C Male 9.1
Sample D Male 5.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 16.6
Sample A Male 17.3
Sample B Male 16.8
Sample C Female 18.0
Sample D Female 16.6
Septum
nTPM: 18.5
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.2
Sample A Male 18.2
Sample B Male 19.7
Sample C Female 17.2
Sample D Female 18.8
Ventral forebrain
nTPM: 18.2
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.6
Sample A Male 18.0
Sample B Male 17.9
Sample C Female 17.6
Sample D Female 19.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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