MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.8 nTPM
HPA:64.8 nTPM
GTEx:55.8 nTPM
FANTOM5:53.1 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:22.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.3
2586 Male, age 75, left hemisphere 74.6
1870 Female, age 42, unknown 67.4
2828 Female, age 72, unknown 64.7
2019 Male, age 18, unknown 64.0
2411 Female, age 72, unknown 61.7
1827 Male, age 72, unknown 59.0
2666 Male, age 74, left hemisphere 58.9
1830 Male, age 51, unknown 58.8
1833 Male, age 53, unknown 56.8
2219 Male, age 76, both hemispheres 46.8
Dorsal raphe nucleus
nTPM: 53.2
2750 Male, age 76, both hemispheres 66.9
2047 Male, age 72, unknown 54.5
1828 Male, age 53, unknown 50.1
2016 Female, age 72, unknown 49.0
2298 Female, age 72, unknown 45.2
Inferior colliculus
nTPM: 51.4
1848 Female, age 42, unknown 54.0
2849 Male, age 72, unknown 51.6
1890 Male, age 53, unknown 51.0
2097 Female, age 72, unknown 49.3
Median raphe nucleus
nTPM: 47.5
2220 Male, age 76, midline 47.5
Pedunculopontine tegmental nucleus
nTPM: 49.8
1921 Female, age 85, both hemispheres 52.9
2334 Male, age 80, both hemispheres 52.5
2338 Male, age 61, both hemispheres 44.1
Periaquaductal grey, anterior
nTPM: 56.1
2502 Female, age 75, unknown 59.2
1947 Male, age 18, unknown 55.0
1795 Male, age 51, unknown 54.0
Periaquaductal grey, dorsal
nTPM: 45.5
2464 Female, age 72, unknown 53.8
1840 Male, age 53, unknown 49.5
1831 Male, age 72, unknown 46.4
2850 Male, age 76, both hemispheres 32.2
Periaquaductal grey, lateral
nTPM: 43.2
2053 Male, age 18, unknown 52.7
2272 Male, age 74, both hemispheres 43.0
2140 Male, age 76, both hemispheres 33.9
Pretectal area
nTPM: 53.9
2407 Male, age 75, both hemispheres 59.6
1816 Male, age 51, unknown 58.7
1817 Female, age 42, unknown 57.8
2007 Male, age 72, unknown 56.6
1815 Male, age 53, unknown 55.5
2667 Female, age 75, unknown 55.5
1944 Female, age 72, unknown 55.1
2825 Male, age 18, unknown 52.2
2273 Male, age 74, both hemispheres 49.6
2224 Female, age 72, unknown 47.9
2316 Male, age 76, right hemisphere 43.8
Red nucleus
nTPM: 64.8
2823 Male, age 76, right hemisphere 69.8
2588 Male, age 74, left hemisphere 69.3
1821 Female, age 72, unknown 68.0
2227 Male, age 72, unknown 66.0
1904 Male, age 53, unknown 65.9
2769 Male, age 72, unknown 65.6
1865 Male, age 51, unknown 65.0
1954 Female, age 42, unknown 64.3
2785 Male, age 18, unknown 63.9
2503 Female, age 72, unknown 61.3
2584 Male, age 75, left hemisphere 60.1
2725 Female, age 75, unknown 58.2
Substantia nigra
nTPM: 48.6
2583 Male, age 75, right hemisphere 60.8
1889 Female, age 72, unknown 55.6
1941 Male, age 53, unknown 54.4
1851 Male, age 51, unknown 49.2
1916 Female, age 42, unknown 48.5
2590 Female, age 75, unknown 47.9
2409 Female, age 72, unknown 44.4
2665 Male, age 74, both hemispheres 42.7
2241 Male, age 72, unknown 41.6
2699 Male, age 18, unknown 41.4
Superior colliculus
nTPM: 57.2
2664 Male, age 75, both hemispheres 72.6
1913 Female, age 42, unknown 64.5
2668 Female, age 75, unknown 57.9
1995 Male, age 72, unknown 57.2
2587 Male, age 74, left hemisphere 56.4
1839 Male, age 51, unknown 55.4
2087 Female, age 72, unknown 53.3
2261 Male, age 18, unknown 53.3
1796 Male, age 53, unknown 52.8
1895 Male, age 76, right hemisphere 49.0
Ventral tegmental area
nTPM: 53.3
2223 Female, age 72, unknown 72.1
2410 Female, age 72, unknown 56.1
1942 Male, age 51, unknown 51.2
2021 Male, age 53, unknown 47.7
1915 Female, age 42, unknown 46.3
2218 Male, age 76, both hemispheres 46.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.8
Samples: 139

Max nTPM: 179.8
Min nTPM: 26.3
Std nTPM: 20.0
Median nTPM: 53.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 179.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 129.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 111.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 111.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 109.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 102.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 93.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 86.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 80.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 80.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 77.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.1
FF:10158-103A5 76 years, female 53.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 29.1
Min nTPM: 18.3
Sample A Female 29.1
Sample B Female 18.3
Sample C Male 19.3
Sample D Male 21.4
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 19.2
Min nTPM: 16.2
Sample B Female 17.2
Sample C Male 19.2
Sample D Male 16.2
Substantia nigra
nTPM: 22.6
Samples: 4

Max nTPM: 26.7
Min nTPM: 19.5
Sample A Female 26.7
Sample B Female 20.8
Sample C Male 23.4
Sample D Male 19.5
Superior colliculi
nTPM: 21.0
Samples: 4

Max nTPM: 26.7
Min nTPM: 16.6
Sample A Female 26.7
Sample B Female 16.6
Sample C Male 19.0
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 24.2
Min nTPM: 21.9
Sample A Male 21.9
Sample B Male 22.6
Sample C Female 24.2
Sample D Female 22.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69447822 Antisense, RP_050419_02_B06, Mouse strain C57BL/6J (56 days, male) 0.6
72283797 Antisense, RP_051027_01_B03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.