MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.3 nTPM
HPA:36.3 nTPM
GTEx:27.1 nTPM
FANTOM5:109.0 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:29.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.4
1830 Male, age 51, unknown 38.3
1833 Male, age 53, unknown 38.3
1870 Female, age 42, unknown 35.4
2411 Female, age 72, unknown 35.1
2219 Male, age 76, both hemispheres 31.2
2019 Male, age 18, unknown 28.6
2828 Female, age 72, unknown 26.5
1827 Male, age 72, unknown 22.9
2586 Male, age 75, left hemisphere 19.7
2666 Male, age 74, left hemisphere 18.4
Dorsal raphe nucleus
nTPM: 22.0
2750 Male, age 76, both hemispheres 38.1
2016 Female, age 72, unknown 23.1
1828 Male, age 53, unknown 19.3
2047 Male, age 72, unknown 15.2
2298 Female, age 72, unknown 14.0
Inferior colliculus
nTPM: 22.5
2849 Male, age 72, unknown 24.5
1848 Female, age 42, unknown 24.2
1890 Male, age 53, unknown 22.4
2097 Female, age 72, unknown 19.0
Median raphe nucleus
nTPM: 25.2
2220 Male, age 76, midline 25.2
Pedunculopontine tegmental nucleus
nTPM: 25.7
2334 Male, age 80, both hemispheres 29.6
1921 Female, age 85, both hemispheres 27.4
2338 Male, age 61, both hemispheres 20.2
Periaquaductal grey, anterior
nTPM: 16.1
2502 Female, age 75, unknown 19.3
1947 Male, age 18, unknown 17.1
1795 Male, age 51, unknown 11.9
Periaquaductal grey, dorsal
nTPM: 16.6
2464 Female, age 72, unknown 23.2
1831 Male, age 72, unknown 15.7
1840 Male, age 53, unknown 14.6
2850 Male, age 76, both hemispheres 13.0
Periaquaductal grey, lateral
nTPM: 17.5
2272 Male, age 74, both hemispheres 21.2
2053 Male, age 18, unknown 19.3
2140 Male, age 76, both hemispheres 12.0
Pretectal area
nTPM: 20.6
2667 Female, age 75, unknown 28.0
2316 Male, age 76, right hemisphere 26.0
1815 Male, age 53, unknown 24.7
2407 Male, age 75, both hemispheres 22.4
2825 Male, age 18, unknown 20.7
2273 Male, age 74, both hemispheres 20.6
1817 Female, age 42, unknown 19.9
2224 Female, age 72, unknown 19.7
2007 Male, age 72, unknown 19.2
1944 Female, age 72, unknown 13.7
1816 Male, age 51, unknown 11.8
Red nucleus
nTPM: 36.3
1865 Male, age 51, unknown 48.3
1904 Male, age 53, unknown 43.5
2503 Female, age 72, unknown 39.7
1821 Female, age 72, unknown 39.3
1954 Female, age 42, unknown 39.1
2769 Male, age 72, unknown 38.4
2823 Male, age 76, right hemisphere 36.2
2227 Male, age 72, unknown 34.9
2588 Male, age 74, left hemisphere 34.8
2785 Male, age 18, unknown 34.2
2584 Male, age 75, left hemisphere 27.3
2725 Female, age 75, unknown 20.0
Substantia nigra
nTPM: 27.1
2409 Female, age 72, unknown 32.8
2699 Male, age 18, unknown 32.1
2590 Female, age 75, unknown 31.5
2241 Male, age 72, unknown 29.7
1851 Male, age 51, unknown 28.8
2583 Male, age 75, right hemisphere 28.2
1916 Female, age 42, unknown 25.5
1889 Female, age 72, unknown 24.4
1941 Male, age 53, unknown 21.1
2665 Male, age 74, both hemispheres 17.0
Superior colliculus
nTPM: 23.4
1913 Female, age 42, unknown 33.6
1895 Male, age 76, right hemisphere 33.4
1995 Male, age 72, unknown 31.7
1839 Male, age 51, unknown 26.0
2587 Male, age 74, left hemisphere 24.3
2668 Female, age 75, unknown 20.8
1796 Male, age 53, unknown 18.3
2261 Male, age 18, unknown 15.9
2664 Male, age 75, both hemispheres 15.9
2087 Female, age 72, unknown 14.1
Ventral tegmental area
nTPM: 28.7
2223 Female, age 72, unknown 36.4
2410 Female, age 72, unknown 31.7
2218 Male, age 76, both hemispheres 30.2
2021 Male, age 53, unknown 25.4
1942 Male, age 51, unknown 24.5
1915 Female, age 42, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.1
Samples: 139

Max nTPM: 69.5
Min nTPM: 13.2
Std nTPM: 9.1
Median nTPM: 25.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 69.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 52.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 52.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 50.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 45.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 45.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 44.8
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 43.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 42.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 41.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.0
FF:10158-103A5 76 years, female 109.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.9
Pig sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 25.6
Min nTPM: 21.3
Sample A Female 21.8
Sample B Female 21.3
Sample C Male 23.6
Sample D Male 25.6
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 19.0
Min nTPM: 16.1
Sample B Female 19.0
Sample C Male 17.3
Sample D Male 16.1
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 26.2
Min nTPM: 22.0
Sample A Female 22.0
Sample B Female 26.0
Sample C Male 25.6
Sample D Male 26.2
Superior colliculi
nTPM: 21.5
Samples: 4

Max nTPM: 25.6
Min nTPM: 16.6
Sample A Female 21.1
Sample B Female 16.6
Sample C Male 22.5
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 32.0
Min nTPM: 27.4
Sample A Male 28.6
Sample B Male 32.0
Sample C Female 29.7
Sample D Female 27.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
72081756 Antisense, RP_051019_01_A07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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